sanshu / contactmapviz Goto Github PK

Let user provide a function which will be called on click.

Need to add function to switch highlight on specific contact.
Should take 3 or 4 parameters - sequence, residue1, residue2, (switch value?).

Add tooltips showing aligned residues at the cursor position.

Could you share the data.json or toy data with the same format in this example?

https://bl.ocks.org/sanshu/1106ceacc42dc99c1b842d954ae32780

Many thanks!

Request from L.J:

E.g. If there are contacts from both structures in the same spot on the map I need residues’ pairs
for both of them. (so total 4 residues)
/but row and column are probably not needed/.

But contact popups are weird now - here is a tricky part:

• if at a given xy position there are contacts from structure 1 and 2
  contact “pupup" should show something like CM1 [A25:F56], CM2 [G25:Y57]
  (I thinkit works now)

but, if there is only one contacts “popup" should show something like
CM1 [A25:F56] and I am not sure if it is like that now

L

Nice visualization.

some ideas:

• for full overlap of two maps of different proteins (with different sizes) one has to use alignment (I think Mallika's script does it). Then it is good to show this alignment along map's edges.
  (probably only aligned regions can be shown at least in the first version)

• you may consider showing residue numbers and types when user points at a contact on a map - this may be easier than showing alignment at the edges and plays +/- similar role. It is better
  than showing scale with numbers along the edge since numbering is not continuous if alignment contains gaps.

Ł

• at least first CM should be not empty

• if both are provided have to have same dimension

Just like axis labels.