Related Issues (20)
- "Couldn't register scheme handler" errors for tool linking (likely incorrectly?) to htslib HOT 12
- probaln_glocal returns suboptimal alignment when bandwidth is too large HOT 2
- undeclared: gettimeofday HOT 12
- Can't make install on OSX (apple sillicon), permission denied HOT 1
- Index file downloads when using GCS file HOT 1
- Segfault when writing uncompressed BAM HOT 2
- Synced reader does not support regions with contigs including colons HOT 4
- markdup `[E::cram_flush_thread] Call to cram_encode_container failed` error HOT 13
- Tabix does not return the correct regions HOT 2
- `bcf_sr_seek` behaves differently for VCF.gz and BCF HOT 2
- Calling tabix on S3 files via jupyter notebook fails HOT 4
- Failed to populate reference for id HOT 9
- extract reads by read name HOT 2
- base mod API clarification HOT 2
- Decompression threads for `bgzip`ped FASTA files HOT 2
- Inconsistency in samtools stats output - cram index issue? HOT 3
- Request to support multiple input files. Currently, bgzip <file1> <file2> only compresses <file1>. HOT 2
- `bam_parse_cigar` possibly adds data to a wrong place HOT 6
- ./configure with or without libcurl htslib-1.17 HOT 17
- Version 1.18 of tabix exhibits poorer performance in querying locus information compared to version 1.16. HOT 2
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from htslib.