Comments (1)
jkbonfield
commented on June 2, 2024
2
The first error is the key one here:
mkdir: /usr/local/include/htslib: Permission denied
It's pretty much exactly what it says - you don't have permission to install this file. (This isn't an htslib issue therefore.)
You'll either need to get permission (eg sudo make install) or rerun configure with a --prefix /some/other/path where you do have permission to install.
from htslib.
Related Issues (20)
- Allocation size too big/invalid memory access during `extend_ref`/`cram_add_to_ref`
- Heap overflow during hts_md5_update
- `annot-tsv --version` does not follow conventions HOT 1
- Segmentation fault of htslib c program written myself HOT 3
- Reading BCFtools FORMAT/BCSQ field HOT 2
- bgzip: keep original modification time when compressing a file.
- Unable to install the HTSlib on Ubuntu 20.04 HOT 2
- formerly caught bgzf_idx_amend_last symbol HOT 3
- Passing missing --reference incorrectly reports cram file missing as well HOT 1
- bgzip: allow specification of output name.
- bcftools --write-index creates sometimes indexes older than the data file. HOT 1
- bcftools corrupts duplicate GT format fields HOT 1
- CRAM load_ref_portion() fails on some Mistletoe references
- feature request: parallelize tabix HOT 5
- Using POSIX and htslib to create x compressed vcf files using x threads HOT 2
- bcftools-1.19: Invalid index is produced by --write-index and --threads on my bcf.gz files HOT 4
- Samtools view fails on CRAM and compressed reference if .gzi file is missing HOT 1
- todo: Improve `--regions-overlap variant`
- wishlist s3 cache HOT 6
- S3 plugin does not correctly handle 307 redirects for newly created buckets HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from htslib.