sameet Goto Github PK
Name: Sameet Mehta
Type: User
Bio: I am a bioinformatics scientist. I currently work as Bioinformatics Scientist at Yale Center for Genome Analysis. I write end-to-end pipelines.
Location: New Haven, CT
Sameet Mehta's Projects
chia-pet2
a versatile and flexible pipeline for analysing different variants of ChIA-PET data
clipseqananalysis
cruzdb
python access to UCSC genomes database
daseq
dogfinder
enrichedheatmap
make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
generic_scripts
Generic scripts in different languages that will do only one thing properly.
hic-pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
hicplotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
human_netseq
kentutils
UCSC command line bioinformatic utilities
quartoreport
Quarto Report for RNA-Seq differential gene expression analysis using DESeq2
r.4cker
scanalysis
Repository to hold functions and code for single cell data analysis.
scextras
seqtk
Toolkit for processing sequences in FASTA/Q formats
seurat
R toolkit for single cell genomics
singlecellworkshop
snakemakernaseqexample
An example RNAseq pipeline with snakemake on the NIH biowulf cluster
velocyto.r
RNA velocity estimation in R
viscap
VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.
wesexplorer
Graphical explorer of the WES VCF files.
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