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konstin avatar konstin commented on May 28, 2024

Hi,

in previous releases, including the one that is on pypi, we only supported python 3.7+. We've only recently extended this to python 3.6. Unfortunately this means that pip install bio-embeddings won't work until we release v0.1.4 (which hopefully won't take too long).

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sacdallago avatar sacdallago commented on May 28, 2024

Hey @ptynecki ,

another note: you install the pipeline like pip install bio-embeddings[all], by this I guess you are reading the develop README. To install for the previous release it's sufficient to run pip install bio-embeddings, we had no extras at the time.

The version currently released on pypi is 0.1.3, and while not much of the way we process pipeline runs has changed for the user since then, we have made quite a significant amount of changes to the APIs (preserving, mostly, backwards compatibility).

If you are interested in knowing what the pipeline looked like in 0.1.3 and what was availbe then, just checkout master.

At the time, we didn't support python 3.6 (for no major reason), but since 0.1.4 we want to be backwards compatible also with python 3.6, especially for the colab integration ;)

If you have any other questions, feel free to ask.

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