Related Issues (20)
- Update jax-unirep dependency version
- Protocol prottrans_t5_xl_u50: URLError: <urlopen error [Errno 113] No route to host> HOT 1
- OSError: Unable to open file (truncated file: eof = 63504384, sblock->base_addr = 0, stored_eof = 374434776) HOT 1
- Custom embeddings
- Docker containers shutting down within a few seconds of starting
- Can not install bio-embedding in wsl HOT 2
- Can not install bioembedings on ubuntu? Please help HOT 1
- Hard times trying to run the bindEmbed21 example.
- Error during first step - greenlet size changed, may indicate binary incompatibility. HOT 1
- 3D Protein Embeddings
- AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__'
- Cant install bio_embeddings in colab HOT 4
- Protocol prottrans_t5_xl_u50: PermissionError: [Errno 13] Permission denied: 'C:\\Users\\user\\AppData\\Local\\Temp\\tmpk7e1m0jg' HOT 1
- from where comes the models in "bio_embeddings/utilities /defaults.yml", where is docs, parameters, dataset ?
- Protocol esm1b: AttributeError: 'dict' object has no attribute 'startswith'
- Cannot Import Any Embedder "load()" has been removed, use yaml = YAML(typ='rt') yaml.load(...)
- Protocol prottrans_bert_bfd: OSError: Unable to load weights from pytorch checkpoint file for .catch/bio_embeddings/prottrans_bert_bfd/model_directory/pytorch_model.bin' at '.catch/bio_embeddings/prottrans_bert_bfd/model_directory/pytorch_model.bin'. If you tried to load a PyTorch model from a TF 2.0 checkpoint, please set from_tf=True.
- Can Word2Vec be used for 4, 5 and 6 kmer? If possible, which file I need to changed and which parameter. I am seeking Guidance on Adapting Word2Vec Code for 4kmer Sequences
- Protocol prottrans_t5_bfd: HTTPError: HTTP Error 406: Not Acceptable
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from bio_embeddings.