rrrlw / fitness Goto Github PK
View Code? Open in Web Editor NEWSoftware library providing fitness landscape functionality in R.
License: Other
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switch RMF to alphabet
allow rough Mt. Fuji fitness landscapes (class RMF_FitLand) to have custom alphabets (of class character)
common S3 generics for FitLand objects
- print.FitLand
- plot.FitLand (network or igraph or ...?)
- summary.FitLand
- ?contour (only for 2 genes)
- ?persp (only for 2 genes)
NK model doesn't work when `fitness` parameter is an `array` (works when `function`)
automated testing for major FitLand types
Types
- additive
- multiplicative
- NK
- rough Mt. Fuji
- stickbreaking
Test goals
- output is always valid FitLand object
- FitLand output contains necessary parameters (and correct values)
- FitLand output w/ sample input is as expected
- errors w/
generate_*functions returned for invalid parameters
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