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bash-htpasswd

bash script for generating encrypted user passwords for common web servers

biosyntax

Syntax highlighting for computational biology

camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

cat_pack

CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

dockerfiles

Dockerfiles for reproducible scientific research and beyond!

dotfiles

dotfiles for personal systems

genericsapi

genome_wide_association_studies

gibbs_tar

repo for gibbs tar

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

intro-to-chipseq

Intro to ChIPseq using HPC

iso

jseqlocation

JS library for drawing sequence location cartoons using canvas drawing. Based on SimonLarsen/jseqlogo

jseqlogo

Javascript sequence logo

kb_variation_importer

kbase_cache_client

Python cache client for KBase.us caching service.

metamorph

Metagenomics and Metatranscriptomics pipeline

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

mlpython

Experiments, scripts, notebooks, and analyses compiled while learning about deep learning

motifensemble

motiffindergibbs

motiffinderhomer

motiffindermeme

onebusaway

Ruby wrapper for onebusaway api.

pearson-simulations

Simulations for pearson correlations, pandas manipulation, and construction of expression compendia.

ppi-f1-gwas

R code implementing QTL mapping of prepulse inhibition phenotypes in F1 crosses of common inbred mouse strains

rmrcontigfilter

Contig filter app for kbase app catalog [testing app]

rosalind

Collection of files used in completing the bioinformatics challenges at http://rosalind.info/problems

rotation_hirschdata

code from March 2017 rotation on Hirsch et al. data

scrapechan

wallpaper scrapper using nokogiri and mini_magick