rrecatto / analysis Goto Github PK
View Code? Open in Web Editor NEWThis project forked from balajisriram/analysis
This project forked from balajisriram/analysis
Open Ephys Analysis README 1. Processing the raw data 2. Changing spike detection parameters. 3. Changing spike sorting parameters. 1. Processing the raw data Provided in the "analysis/helpers" folder is the function "processAndSaveSession" call the function as follows: sess = processAndSaveSession(dataFolder); where dataFolder is folder containing the raw data. For Example: sess = processAndSaveSession('D:\FullData074\bas074_2015-11-24_14-16-03'); Function processes data with default spike detection and spike sorting parameters. Session will automatically be saved once sorting completes and can be found in folder function is called in. 2. Changing Spike Detection Parameters The spike detection parameters can be found and changed in the file: analysis\classes\spikeDetectionParams\filteredThreshold.m Default parameters are as follows: freqLowHi = [200 10000] minmaxVolts thresholdVolts thresholdVoltsSTD waveformWindowMs = 1.5 peakWindowMs = 0.6 alignMethod = 'atPeak' peakAlignment = 'filtered' returnedSpikes = 'filtered' lockoutDurMs = 1 thresholdMethod = 'std' ISIviolationMS = 1 method = 'filteredThresh' samplingFreq = 30000; 3. Changing Spike Sorting Parameters The spike sorting parameters can be found and changed in the file: analysis\classes\spikeSortingParams\KlustaKwik.m Default parameters are as follows: s.minClusters = 4; s.maxClusters = 30; s.nStarts = 1; s.splitEvery = 5; s.maxPossibleClusters = 30; s.featureList = {'tenPCs'}; s.arrangeClustersBy = 'averageAmplitude'; s.postProcessing ='biggestAverageAmplitudeCluster';
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.