This repository contains assignment submissions for coursework.
Group1: Rohit Satyam, Anel Gonzalez, Jiayi Huang (Jerry)
| Week | Topic | Assignments | Group |
|---|---|---|---|
| week1 | RNA-seq | GSE198256 Differential Expression | 1 |
| week2 | RNA-seq | Differential Expression + Gene Set Analysis | 1 |
| week3 | ATAC-seq | GSE79019 (Macrophages 3hs, 6hrs, 12hrs) Differential Accessibility | 1 |
| week4 | scRNA-seq | SnakeMake Pipeline scRNA | 1 |
| week5 | Multiome | scATAC + scRNA | 1 |
| week6 | Integration | scRNA + bulkATAC Integration | 1 |
| week7 | DNA Methylation | GSE188573 Quality Control + DMP + DVP + ORA | 1 |
| FINAL* | Hi-C | Group Project | Aleksandra Kurowska, Anel Gonzalez, Rohit Satyam |
*The final assignment is a group work so in order to remove redundancy, I will be redirecting the reader to the repository where all the files and folders have been organized. The folder exceed my free account quota.
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