Comments (1)
same behaviour for k=7
(default) and k=9
from viralclust.
Related Issues (20)
- duplicated sequence in final set
- divide input sequences for positive / negative strand
- NCBI Accession IDs enhancement HOT 1
- multiprocessing for sort-sequences
- parameter/profiles for global and local cluster structures
- NCBI annotation via Regex HOT 1
- NCBI collection year format
- UpSetR plots for representative genomes and GOI
- unclustered sequences in final set in mmseqs2
- Preprocessing filter for large stretches of consecutive Ns
- evaluation script is executed 5 times for each cluster tool
- Inconsistent use of the label revComp/revcomp HOT 2
- grep command in sumaclust.nf to filter singleton cluster
- sort_sequences: different default behavior
- nextflow exits if HDBSCAN has no unclustered sequences
- use PCA instead of UMAP as default dimension reduction for HDBscan
- better restrictions for yml files
- invalid compressed data in ncbi update process
- HDBSCAN error for large dataset HOT 1
- RAM vs Diskspace trade off
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from viralclust.