rkms86 / susan Goto Github PK

I installed SUSAN on an Ubuntu 20.04 workstation running CUDA 11.4. During cmake, I got the following error:
########################################
CMake Warning at CMakeLists.txt:27 (find_package):
By not providing "FindCUDAToolkit.cmake" in CMAKE_MODULE_PATH this project
has asked CMake to find a package configuration file provided by
"CUDAToolkit", but CMake did not find one.

Could not find a package configuration file provided by "CUDAToolkit" with
any of the following names:

CUDAToolkitConfig.cmake
cudatoolkit-config.cmake

Add the installation prefix of "CUDAToolkit" to CMAKE_PREFIX_PATH or set
"CUDAToolkit_DIR" to a directory containing one of the above files. If
"CUDAToolkit" provides a separate development package or SDK, be sure it
has been installed.

CMake Error at CMakeLists.txt:43 (message):
SUSAN does not support your CUDA toolkit version.

-- Configuring incomplete, errors occurred!
###########################################

I solved this by specifying the cuda path in CMakeLists.txt and removing the rest of the Configure CUDA section

set(CMAKE_PREFIX_PATH /usr/local/cuda)

I though I'd make a separate issue for my questions.

1. why duplicating particle set for MRA is necessary? because you want to preserve original particle stack? but the project does output particles for each iteration.
2. in the tutorial in the very first project the prj_001_mra.ptclsraw is bin8, while everything else is bin4. It does run, so the binning does not have to match between particles and ref/masks?
3. initial reconstruction is not used in the project, I guess it's calculated only for demonstration?
4. I found that my tomo_size didnt match binned stacks size so I had to replace 3710//2 by math.ceil(3710/2)

https://www.ccpem.ac.uk/mrc_format/mrc2014.php#note6

Hi,

I'm trying to follow the tutorial with Python API. I could not find prj_001.ptclsraw anywhere and wanted to convert picked_bin2.tbl, but then I couldn't find the python function to do this. In matlab api I can see import_dynamo_table. I dont have matlab installed. Can I get around this?