rfinck / citrus Goto Github PK

Citrus is a package for identifying clusters of cells in multidimensional flow cytometry data associated with an experimental or clincal endpoint of interest.

• Installation instructions available on the Installing Citrus Page.
• Instructionson how to configure Citrus for your data available on the Getting Started Page.
• Example analyses available on the Examples Page.
• See the Citrus FAQ for questions related to building and/or running Citrus.

Version 0.08

- Completely refactored codebase that is hopefully much more intuitive.

- Documentation added.

Version 0.07

- Multiclass analysis available for SAM and Nearest Shrunken Centroid models

- Small GUI enhancements

Version 0.06

- Changed feature names

- Many new graphical outputs for result visualization

Version 0.05

- Adding support for SAM (two-class only)

Version 0.04

- Adding support for Survival analysis (glmnet model only)

Version 0.03

- Switching to ggplot2 and adding feature heiarachy plots

Version 0.02

- Now includes shiny web GUI for running citrus

Version 0.01

- Initial Citrus Test Code