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rfechtner avatar rfechtner commented on July 19, 2024

Should be no problem. In its current structure cyclone can't utilize the faster row slicing or arithmetic opperations CSR offers, thus I'd propose simply converting it back to a regular array in the utils/parse_data() function. Would that be acceptible?

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fbnrst avatar fbnrst commented on July 19, 2024

This is how I workaround the issue at the moment, so this is absolutely fine by me. Not sure whether a warning should be shown as smaller machines might run into memory problems.

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rfechtner avatar rfechtner commented on July 19, 2024

The new version v3.2.3 is now available through PyPi and contains the fix, bioconda should follow soon.

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