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anndata

Annotated data.

awesome-python

A curated list of awesome Python frameworks, libraries and software

axolotl-calculations-phd

Calculations performed for the axolotl chapter of my PhD thesis

bio-image_analysis_with_python

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

bioc_docker

Docker containers for Bioconductor

bioservices

Access to Biological Web Services from Python.

c14

Maximum-Likelihood estimation of the dynamics of hippocampal neurogenesis in adult humans

c14_liver

Analysis of C14 liver data

cellxgene-gateway-proxy-example

Cellxgene proxy example setup

celotto_2023

scRNAseq unravels the transcriptional network underlying zebrafish retina regeneration

clapy

Proliferation rate estimation from continuous labeling assays

clasim

Simulation of continuous labeling assays

covpipe

cython

A Python to C compiler

dcgc-single-cell-1

diffxpy

Differential expression analysis for single-cell RNA-seq data.

example-requirements

A Binder-compatible repo with a requirements.txt file

expert-sniffle

gcf-docker

Docker files for autmated buids at dockerhub

gillespie

an implementation of the Gillespie algorithm

haesleinhuepf.github.io

heinke_2020

Diploid hepatocytes drive physiological liver renewal in adult humans

hippocampus_toy_model

First ideas for a quantitative model of neurogenesis in the adult hippocampus. Here, implement a toy ODE model with interactive controls as demo for Rupert.

iminuit

Interactive Minimization Tools based on Minuit

ipycache

Defines a %%cache cell magic in the IPython notebook to cache results of long-lasting computations in a persistent pickle file

lange_single-cell_2019

Single cell sequencing analysis for Lange et al., 2019

lo2s

Linux OTF2 Sampling - A Lightweight Node-Level Performance Monitoring Tool

map-of-github-data

This repository contains tiles and data for the map of github

markdown-licenses

A collection of open source licenses in Markdown format. Contributions are always welcome!

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel