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genomedisco

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics

ggr-cwl

CWL tools and workflows for GGR

giggle

Interval data structure

gluon-api

A clear, concise, simple yet powerful and efficient API for deep learning.

goatools

Python scripts to find enrichment of GO terms

gpfates

gplearn

Genetic Programming in Python, with a scikit-learn inspired API

grad-cam-pytorch

PyTorch implementation of Grad-CAM

graph_convnets_pytorch

PyTorch implementation of graph ConvNets, NIPS’16

graphi-c

GrapHi-C: graph-based visualization of Hi-C data

gtex-pipeline

GTEx Consortium data production and analysis pipelines

gwasdb

Machine-curated database of genetic disease and genome-wide association studies

hcluster

Hierarchical Clustering Algorithms

hdbscan

A high performance implementation of HDBSCAN clustering.

hdf5-blosc

Filter for HDF5 that uses Blosc

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hicexplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

higlass

Fast contact matrix visualization for the web.

hpat

hpelm

High performance implementation of Extreme Learning Machines (fast randomized neural networks).

hts-exploration

hyppo-x

Discovering the underlying effect of both environment and genotype on a phenotype of an individual (plant/animal) using topological data analysis.

ibis

A pandas-like deferred expression system, with first-class SQL support (Impala, PostgreSQL, SQLite, ...)

iclr2017

ICLR2017

ideep

iDeep: integrated prediction of RNA-protein binding sites using deep learning

ideepa

ideepe

inferring RBP binding sites and motifs using local and global CNNs

ideeps

inferring sequence-structure motifs using deep learning