remkoduursma / baadanalysis Goto Github PK
View Code? Open in Web Editor NEWAnalysis of BAAD (Duursma and Falster, New Phytologist, 2016)
Analysis of BAAD (Duursma and Falster, New Phytologist, 2016)
Panel 1 - coverage of climate space. Panel 2 - diagram of tree with variable abbreviations.
Use MAP and MAT instead of mgdd0 and MI, but move Fig 4 to SI
Use Daniels log axis code to make all axes more consistent (now lazily use magaxis)
Need to explain the difference so we can refer to it , and don't cause confusion
all BAAD co-authors listed here, with basic contact info (institution only?)
Need more emphasis that this is for woody vegetation, in all captions etc.
In b31c098 , I have replaced it with
download.file(..., mode="wb")
please check this works on your system?
Redo analysis without plantations; make sure results are robust to including them.
@RemkoDuursma : should this line also use data=dat_mlf
as in previous 3 lines?
If so just let me know and i'll fix here.
https://github.com/RemkoDuursma/baadanalysis/blob/master/statanalysis.R#L37
Had a great time reproducing your paper at the OpenConBerlin Reprohack! It reproduced like a dream ❤️ remake
❤️
The only (technically inconsequential but we thought we'd let you know) discrepancy we found was that the published figure S1 is actually S2 in the reproduction and vice versa.
Here's a short report of how we got on if you're interested.
:)
Hi Remko,
I see you've made lots of changes! I tried running this but got error due to missing file. Have you committed it?
[ LOAD ]
Error in managed_environment_assert_sources_exist(sources) :
Files not found:
- R/rsquaredglmm.R
Calls: <Anonymous> ... <Anonymous> -> managed_environment_assert_sources_exist
Execution halted
Hexagons, like Figure 1a
basically a short version of some stuff from De Kauwe 2012; can combine with existing Methods S1
I already have some functions for doing this that will work across platforms, i.e doesn't require local working directory to be set.
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