add __CYGWIN__ to Timer.cpp about rcpp HOT 6 CLOSED

Done. In the future, please prefer creating a pull request against the current devel version.

from rcpp.

@eantonya: Does Rcpp pass R CMD check under Cygwin? R itself does not formally support Cygwin, so this is not a corner we explore much.

from rcpp.

R CMD check passes, but I had to remove the inst/doc folder to be able to
build as I was getting the following error:

Loading required package: RcppTestA
Error in eval(expr, envir, enclos) : boom
Error in eval(expr, envir, enclos) : cannot convert to environment
Error in eval(expr, envir, enclos) : cannot convert to environment
Error in eval(expr, envir, enclos) : cannot convert to environment
Error in eval(expr, envir, enclos) : no such binding : 'xx'
Error in eval(expr, envir, enclos) : binding is locked: 'b'
Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
Error in eval(expr, envir, enclos) : boom

I'll be happy to test a few things if you have an idea of why this is
happening.

On Thu, Nov 14, 2013 at 8:54 AM, Dirk Eddelbuettel <[email protected]

wrote:

@eantonya https://github.com/eantonya: Does Rcpp pass R CMD check under
Cygwin? R itself does not formally support Cygwin, so this is not a corner
we explore much.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/50#issuecomment-28489689
.

from rcpp.

inst/doc is just documentation but maybe it is related to the vignettes.

In any event, you were two releases behind. We are now at 0.10.6. Can you apply your patch, and then test again?

Also, a better place to discuss this (as you'd get more eyeballs) is the rcpp-devel list.

from rcpp.

While the patch solution I found on google for the error I was getting was
a bit older, everything I did was for 0.10.6. The error comes up
while/after building the vignettes. Here's the entire output (I just
realized there was a bunch of stuff earlier as well - tbh all I wanted was
a build so it didn't matter for me if vignettes couldn't be built). Sorry
if this is too much info for this venue.

$ R CMD build .

• checking for file ‘./DESCRIPTION’ ... OK
• preparing ‘Rcpp’:
• checking DESCRIPTION meta-information ... OK
• cleaning src
• running ‘cleanup’
• installing the package to process help pages
• building the PDF package manual
  Hmm ... looks like a package
  Converting Rd files to LaTeX ...
  Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Cygwin)
restricted \write18 enabled.
entering extended mode
(./Rd2.tex
LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 78 languages loaded.
(/usr/share/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf-dist/tex/latex/base/bk10.clo))
(/usr/lib/R/share/texmf/tex/latex/Rd.sty
(/usr/share/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texmf-dist/tex/latex/url/url.sty)
(/usr/lib/R/share/texmf/tex/latex/upquote.sty
(/usr/share/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texmf-dist/tex/latex/base/ts1enc.def))) NOT loading ae
(/usr/share/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texmf-dist/tex/latex/psnfss/times.sty) NOT loading lmodern
(/usr/share/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

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(/usr/share/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref) setting the option has no effect on input line
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) (/usr/share/texmf-dist/tex/latex/base/makeidx.sty)
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Writing index file Rd2.idx
No file Rd2.aux.
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[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
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[]\T1/ptm/m/n/10 In or-der to ac-cess the dec-la-ra-tions for cus-tom
\T1/pcr/m
/n/10 Rcpp::as \T1/ptm/m/n/10 and \T1/pcr/m/n/10 Rcpp::wrap \T1/ptm/m/n/10
han-
dlers the \T1/pcr/m/n/10 compileAttributes
7
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[] \T1/pcr/m/n/10 includes = character(), env = parent.frame(),
reb
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[]\T1/ptm/m/n/10 Character vec-tor of user in-cludes (in-serted af-ter the
in-c
ludes pro-vided by \T1/pcr/m/n/10 depends\T1/ptm/m/n/10 ).
[8]
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[]\T1/ptm/m/n/10 Functions de-fined us-ing \T1/pcr/m/n/10 cppFunction
\T1/ptm/m
/n/10 must have re-turn types that are com-pat-i-ble with \T1/pcr/m/n/10
Rcpp::
wrap
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12 [13]
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rena
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[]\T1/ptm/m/n/10 Usually, the name for the file on which to write the C++
code,
by de-fault \T1/pcr/m/n/10 paste0(CppClass, "Module.cpp")\T1/ptm/m/n/10 .

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[]\T1/ptm/m/n/10 The name for the Rcpp mod-ule, by de-fault \T1/pcr/m/n/10
past
e0("class_",CppClass)\T1/ptm/m/n/10 .
[15]
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[]\T1/ptm/m/n/10 The Rcpp Mod-ule mech-a-nism has a num-ber of other
op-tional
tech-niques, not cov-ered by \T1/pcr/m/n/10 exposeClass()\T1/ptm/m/n/10 .
[16]
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[]\T1/pcr/m/n/9 ### To expose the table() method, and the inherited
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\T1/ptm/m/n/10 tribute, but in-stead should add an en-try for the
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Linkin
gTo
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[]\T1/ptm/m/n/10 If the pur-pose of load-ing the mod-ule is to de-fine
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based on C++ classes, see [][]\T1/pcr/m/n/10
setRcppClass[][]\T1/ptm/m/n/10
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`\T1/pcr/m/n/10 rc
pp_hello_world.R\T1/ptm/m/n/10 '
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list(),
contains = ,[]

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charact
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[27] 28 [29]
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\T1/ptm/m/n/10 then a warn-ing is printed to the con-sole. You can dis-able
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s warn-ing by set-ting the \T1/pcr/m/n/10 rcpp.warnNoExports
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entering extended mode
(./Rd2.tex
LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 78 languages loaded.
(/usr/share/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf-dist/tex/latex/base/bk10.clo))
(/usr/lib/R/share/texmf/tex/latex/Rd.sty
(/usr/share/texmf-dist/tex/latex/base/ifthen.sty)
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[16]
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18 19 [20]
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[]\T1/ptm/m/n/10 If the pur-pose of load-ing the mod-ule is to de-fine
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21
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[24]
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\T1/ptm/m/n/10 \T1/pcr/m/n/10 rcpp_hello_world.cpp\T1/ptm/m/n/10 ' are also cr e-ated in the\T1/pcr/m/n/10 src\T1/ptm/m/n/10 '. An R file
`\T1/pcr/m/n/10 rc
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25 26
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[27] 28 [29]
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\T1/ptm/m/n/10 then a warn-ing is printed to the con-sole. You can dis-able
thi
s warn-ing by set-ting the \T1/pcr/m/n/10 rcpp.warnNoExports
[30](./Rd2.ind [31] [32] [33]) (./Rd2.aux)

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[]\T1/ptm/m/n/10 In or-der to ac-cess the dec-la-ra-tions for cus-tom
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\T1/ptm/m/n/10 func-tion, it can op-tion-ally also have a di-rect C++
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[]\T1/ptm/m/n/10 The name for the Rcpp mod-ule, by de-fault \T1/pcr/m/n/10
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[15]
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Linkin
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21
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[]\T1/pcr/m/n/10 maintainer = if(missing( author)) "Who to complain to"
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[24]
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\T1/ptm/m/n/10 \T1/pcr/m/n/10 rcpp_hello_world.cpp\T1/ptm/m/n/10 ' are also cr e-ated in the\T1/pcr/m/n/10 src\T1/ptm/m/n/10 '. An R file
`\T1/pcr/m/n/10 rc
pp_hello_world.R\T1/ptm/m/n/10 '
25 26
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[]\T1/pcr/m/n/10 setRcppClass(Class, CppClass = , module = , fields =
list(),
contains = ,[]

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[27] 28 [29]
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\T1/ptm/m/n/10 then a warn-ing is printed to the con-sole. You can dis-able
thi
s warn-ing by set-ting the \T1/pcr/m/n/10 rcpp.warnNoExports
[30](./Rd2.ind [31] [32] [33]) (./Rd2.aux) )
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Saving output to ‘/tmp/Rtmpntu5MZ/Rbuild7744a289dc5/Rcpp/build/Rcpp.pdf’ ...
Done

• creating vignettes ...sh: line 1: 4424 Segmentation fault (core
  dumped) '/usr/lib/R/bin/Rscript' --vanilla --default-packages= -e
  "tools::buildVignettes(dir = '.', tangle = TRUE)" >
  '/tmp/Rtmpntu5MZ/xshell77456717a91' 2>&1
  ERROR
  Loading required package: inline
  Loading required package: highlight
  Loading required package: tools
  Loading required package: codetools

Attaching package: ‘Rcpp’

The following object is masked from ‘package:inline’:

registerPlugin

Error in eval(expr, envir, enclos) :
could not convert using R function : as.data.frame
Error in eval(expr, envir, enclos) :
could not convert using R function : as.data.frame
Error in eval(expr, envir, enclos) : not compatible with INTSXP
Error in eval(expr, envir, enclos) : cannot convert to function
Error in eval(expr, envir, enclos) : cannot convert to function
Error in eval(expr, envir, enclos) : cannot convert to function
Error in eval(expr, envir, enclos) : cannot convert to function
Error in eval(expr, envir, enclos) : cannot convert to function
Error in eval(expr, envir, enclos) : not a closure
Error in eval(expr, envir, enclos) : not a closure
Error in eval(expr, envir, enclos) : not compatible with REALSXP
Error in runit_language(funx) : object 'funx' not found
Error in eval(expr, envir, enclos) :
could not convert using R function : as.call
Error in eval(expr, envir, enclos) :
could not convert using R function : as.call
Error in eval(expr, envir, enclos) :
could not convert using R function : as.call
Error in eval(expr, envir, enclos) :
could not convert using R function : as.call
Error in eval(expr, envir, enclos) :
could not convert using R function : as.call
Error in eval(expr, envir, enclos) :
could not convert using R function : as.pairlist
Error in eval(expr, envir, enclos) :
could not convert using R function : as.pairlist
Error in eval(expr, envir, enclos) : not a matrix
Error in eval(expr, envir, enclos) : not a matrix
Error in eval(expr, envir, enclos) : read only data member
Error in eval(expr, envir, enclos) : property is read only

• checking for file ‘testRcppClass/DESCRIPTION’ ... OK
• preparing ‘testRcppClass’:
• checking DESCRIPTION meta-information ... OK
• cleaning src
• checking for LF line-endings in source and make files
• checking for empty or unneeded directories
• building ‘testRcppClass_0.1.tar.gz’
• installing source package ‘testRcppClass’ ...
  ** libs
  g++ -I/usr/lib/R/include -DNDEBUG
  -I"/tmp/Rtmpntu5MZ/Rinst7741e34a265/Rcpp/include" -ggdb -O2 -pipe
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/debug/R-3.0.1-1
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/debug/R-3.0.1-1
  -c Num.cpp -o Num.o
  g++ -I/usr/lib/R/include -DNDEBUG
  -I"/tmp/Rtmpntu5MZ/Rinst7741e34a265/Rcpp/include" -ggdb -O2 -pipe
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/debug/R-3.0.1-1
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/debug/R-3.0.1-1
  -c rcpp_hello_world.cpp -o rcpp_hello_world.o
  g++ -I/usr/lib/R/include -DNDEBUG
  -I"/tmp/Rtmpntu5MZ/Rinst7741e34a265/Rcpp/include" -ggdb -O2 -pipe
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/debug/R-3.0.1-1
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/debug/R-3.0.1-1
  -c rcpp_module.cpp -o rcpp_module.o
  g++ -I/usr/lib/R/include -DNDEBUG
  -I"/tmp/Rtmpntu5MZ/Rinst7741e34a265/Rcpp/include" -ggdb -O2 -pipe
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/debug/R-3.0.1-1
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/debug/R-3.0.1-1
  -c stdVector.cpp -o stdVector.o
  g++ -shared -o testRcppClass.dll Num.o rcpp_hello_world.o rcpp_module.o
  stdVector.o /tmp/Rtmpntu5MZ/Rinst7741e34a265/Rcpp/lib/libRcpp.a
  -L/usr/lib/R/lib -lR -lintl
  installing to /tmp/RtmpJMjiNC/file1148156d215b/templib/testRcppClass/libs
  ** R
  ** preparing package for lazy loading
  ** help
  *** installing help indices
  ** building package indices
  ** testing if installed package can be loaded
• DONE (testRcppClass)
  Loading required package: testRcppClass

Attaching package: ‘testRcppClass’

The following object is masked by ‘.GlobalEnv’:

bar, foo

Error in eval(expr, envir, enclos) : not compatible with REALSXP
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : not compatible with INTSXP
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : not compatible with RAWSXP
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : expecting a string
Error in eval(expr, envir, enclos) : expecting a string
Error in eval(expr, envir, enclos) : expecting a string
Error in eval(expr, envir, enclos) : expecting a string
Error in eval(expr, envir, enclos) : expecting a single value
Error in eval(expr, envir, enclos) : not compatible with LGLSXP
Error in eval(expr, envir, enclos) : not compatible with LGLSXP
Error in eval(expr, envir, enclos) : not compatible with REALSXP
Error in eval(expr, envir, enclos) : not compatible with REALSXP
Error in eval(expr, envir, enclos) : not compatible with INTSXP
Error in eval(expr, envir, enclos) : not compatible with INTSXP
Error in eval(expr, envir, enclos) : not compatible with RAWSXP
Error in eval(expr, envir, enclos) : not compatible with RAWSXP
Error in eval(expr, envir, enclos) : expecting a string vector
Error in eval(expr, envir, enclos) : expecting a string vector
Error in eval(expr, envir, enclos) : expecting a string vector
Error in eval(expr, envir, enclos) : expecting a string vector
Error in eval(expr, envir, enclos) : expecting a string vector
Error in eval(expr, envir, enclos) : no such slot
Error in eval(expr, envir, enclos) : no such slot
Error in eval(expr, envir, enclos) : not an S4 object
Error in eval(expr, envir, enclos) : not an S4 object
Error in getClass("someclassthatdoesnotexist") :
“someclassthatdoesnotexist” is not a defined class
Error in eval(expr, envir, enclos) : not a matrix
Error in eval(expr, envir, enclos) : parse error
Error in eval(expr, envir, enclos) : not a matrix

• checking for file ‘RcppTestA/DESCRIPTION’ ... OK
• preparing ‘RcppTestA’:
• checking DESCRIPTION meta-information ... OK
• cleaning src
• checking for LF line-endings in source and make files
• checking for empty or unneeded directories
• building ‘RcppTestA_1.0.tar.gz’
• installing source package ‘RcppTestA’ ...
  ** libs
  g++ -I/usr/lib/R/include -DNDEBUG
  -I"/tmp/Rtmpntu5MZ/Rinst7741e34a265/Rcpp/include" -ggdb -O2 -pipe
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/debug/R-3.0.1-1
  -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/debug/R-3.0.1-1
  -c rcpp_hello_world.cpp -o rcpp_hello_world.o
  g++ -shared -o RcppTestA.dll rcpp_hello_world.o
  /tmp/Rtmpntu5MZ/Rinst7741e34a265/Rcpp/lib/libRcpp.a -L/usr/lib/R/lib -lR
  -lintl
  installing to /tmp/RtmpJMjiNC/file114815c229a3/templib/RcppTestA/libs
  ** R
  ** preparing package for lazy loading
  ** help
  *** installing help indices
  ** building package indices
  ** testing if installed package can be loaded
• DONE (RcppTestA)
  Loading required package: RcppTestA
  Error in eval(expr, envir, enclos) : boom
  Error in eval(expr, envir, enclos) : cannot convert to environment
  Error in eval(expr, envir, enclos) : cannot convert to environment
  Error in eval(expr, envir, enclos) : cannot convert to environment
  Error in eval(expr, envir, enclos) : no such binding : 'xx'
  Error in eval(expr, envir, enclos) : binding is locked: 'b'
  Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
  Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
  Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
  Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
  Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
  Error in eval(expr, envir, enclos) : cannot convert to symbol (SYMSXP)
  Error in eval(expr, envir, enclos) : boom

On Fri, Nov 15, 2013 at 2:27 PM, Dirk Eddelbuettel <[email protected]

wrote:

inst/doc is just documentation but maybe it is related to the vignettes.

In any event, you were two releases behind. We are now at 0.10.6. Can you
apply your patch, and then test again?

Also, a better place to discuss this (as you'd get more eyeballs) is the
rcpp-devel list.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/50#issuecomment-28600691
.

from rcpp.

There is an always lot of line noise due to latex and the manual built from the help page --but it then fails, hard and repeatedly. It starts with a segfault, and then continues with lots of errors.

Sorry, but I don't think you;ll have a lot of luck with this.

from rcpp.