Comments (1)
Yes, for example:
cat input.fa | muscle -align /dev/stdin -output /dev/stdout | tee output.afa
from muscle.
Related Issues (20)
- Request: don't rearrange sequence order HOT 1
- Minor: interface change from 3.8 to 5.1 may benefit from more helpful error message HOT 1
- Multiple fasta files error HOT 1
- Segmentation fault while running muscle HOT 3
- gcc
- Muscle5.1 alignment error HOT 1
- Aarch64 muscle built from source fails HOT 19
- Where did profile-profile alignment go in v5? HOT 3
- how to use it in .net core? any one who can help me? thank you!
- *** Error in `muscle': double free or corruption (out): 0x00007ffdb8176090 *** HOT 2
- Resampling Clarification HOT 5
- Can muscle be made to take two or more non-file cli arguments (input streams)? [v3.8] HOT 1
- Memory Object >4Gb error HOT 6
- gap penlty HOT 2
- @ in output filename required for -perm all with -super5 HOT 1
- Memory Object Too Large due to very long sequences HOT 2
- Automatic optimal number of threads HOT 2
- If is possible to release Muscle V5 version which has no dependence of omp.h? HOT 8
- Specifying threads HOT 4
- usorter.cpp(88) assert failed: L >= m_WordLength HOT 2
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from muscle.