rajlabmssm / downloadr Goto Github PK

Run sysreqs=$(Rscript -e 'cat("apt-get update -y && apt-get install -y", paste(gsub("apt-get install -y ", "", remotes::system_requirements("ubuntu", "20.04")), collapse = " "))')
apt-get update -y && apt-get install -y python3 zlib1g-dev make libicu-dev pandoc git libcurl4-openssl-dev libssl-dev libgit2-dev libsodium-dev libsecret-1-dev libnode-dev libxml2-dev librdf0-dev
Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB]
Get:2 http://archive.ubuntu.com/ubuntu focal InRelease [[26](https://github.com/RajLabMSSM/downloadR/actions/runs/3355210492/jobs/5559303557#step:11:27)5 kB]
Get:3 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [926 kB]
Get:4 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [2,267 kB]
Get:5 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [[27](https://github.com/RajLabMSSM/downloadR/actions/runs/3355210492/jobs/5559303557#step:11:28).5 kB]
Get:6 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [1,655 kB]
Get:7 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB]
Get:8 http://archive.ubuntu.com/ubuntu focal-backports InRelease [108 kB]
Get:9 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB]
Get:10 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB]
Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1,275 kB]
Get:12 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB]
Get:13 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [1,772 kB]
Get:14 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1,224 kB]
Get:15 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [37.7 kB]
Get:16 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [2,737 kB]
Get:17 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [55.2 kB]
Get:18 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [27.5 kB]
Fetched 24.2 MB in 3s (7,982 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
librdf0-dev is already the newest version (1.0.17-1.1ubuntu1).
libsodium-dev is already the newest version (1.0.18-1).
libsodium-dev set to manually installed.
make is already the newest version (4.2.1-1.2).
python3 is already the newest version (3.8.2-0ubuntu2).
python3 set to manually installed.
libgit2-dev is already the newest version (0.[28](https://github.com/RajLabMSSM/downloadR/actions/runs/3355210492/jobs/5559303557#step:11:29).4+dfsg.1-2).
libnode-dev is already the newest version (10.19.0~dfsg-3ubuntu1).
git is already the newest version (1:2.25.1-1ubuntu3.6).
libicu-dev is already the newest version (66.1-2ubuntu2.1).
libicu-dev set to manually installed.
libssl-dev is already the newest version (1.1.1f-1ubuntu2.16).
libxml2-dev is already the newest version (2.9.10+dfsg-5ubuntu0.20.04.4).
zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu1.5).
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:

The following packages have unmet dependencies:
 libcurl4-gnutls-dev : Conflicts: libcurl4-openssl-dev but 7.[68](https://github.com/RajLabMSSM/downloadR/actions/runs/3355210492/jobs/5559303557#step:11:69).0-1ubuntu2.14 is to be installed
 libcurl4-openssl-dev : Conflicts: libcurl4-gnutls-dev but 7.68.0-1ubuntu2.13 is to be installed
E: Error, pkgProblemResolver::Resolve generated breaks, this may be caused by held packages.
Error: Process completed with exit code 100.