Type: Organization
Bio: The Raj Lab investigates neurodegenerative disorders through the application of computational methods to multi-omics data
Location: Icahn School of Medicine at Mount Sinai, Department of Neuroscience, New York City, New York
Blog: https://rajlab.org
rajlabmssm's Projects
Tutorials, tips and tricks with the Minerva computing cluster
Multi-Omics Factor Analysis
MyND Project
Password protection for static pages
Data and code associated with the Parkinson's Disease review paper by Schilder, Navarro & Raj (2021).
Seurat analysis pipelines for Parkinson's Disease scRNA-seq data from monocytes
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
A snakemake pipeline for QTL mapping. Based on the GTEX pipeline
A complete tool set for molecular QTL discovery and analysis
Official website for the Raj Lab detailing personnel, updates, current projects and opportunities.
A repo to contain various RNA-seq processing pipelines, to cut down how many different repos I have.
single cell fresh microglia and single nuclei RNA seq
snakemake refactoring of legacy code for splicing analysis
Snakemake pipeline for SV discovery and analysis
Analysis of cryptic splicing in the STMN2 locus across the NYGC ALS consortium
harmonization, liftover, and imputation of summary statistics from GWAS
Related scripts and files for the paper "Tensor Decomposition of Stimulated Monocyte and Macrophage Gene Expression Profiles Identifies Neurodegenerative Disease-specific Trans-eQTLs"