qindan2008 Goto Github PK

rrbs_nf

Nextflow pipeline for analyzing RRBS data from NuGen Ovation library

rrbs_workflow

rscsampler

sc-type

sc2marker

Surface Marker Detection Using Single Cell Data

scalign

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

scampi_single_cell_rna

Code related to scRNA analysis using the scAmpi workflow

scan2

SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

scanalyzer

Integrative analysis pipeline for scRNA-seq data

scannotatr

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scatterpie

:art: scatter pie plot

scbert

sccatch

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

scccess

Single-cell Consensus Clusters of Encoded Subspaces

sccnv

SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing

sccoda

A Bayesian model for compositional single-cell data analysis

scedar

Single-cell exploratory data analysis for RNA-Seq

scena

Consensus Clustering of Single-cell RNA-seq Data by Enhancing Network Affinity

scepath

An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data

scevan

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

scextras

scgae

single-cell graph autoencoder

scgate

marker-based purification of cell types from single-cell RNA-seq datasets

scgate.benchmark

scgate.demo

scgena

single cell Gene co-Expression Network Analysis

scgenefit-python

Python code for genetic marker selection using linear programming

schlacount

Count HLA alleles in single-cell RNA-seq data

scibet

A portable and fast single cell type identifier