WIP
qiime2 / q2-stats Goto Github PK
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License: BSD 3-Clause "New" or "Revised" License
We should add the typical brackets to indicate significant results between groups.
This also means we should check that the stats table we are displaying is in fact related to the group data we are plotting.
Add primitive type in q2-stats and the framework for the following (currently in q2-composition under ANCOM-BC method):
def _parse_terms(formula):
parse = formulaic.parser.parser.DefaultFormulaParser(include_intercept=False)
terms = parse.get_ast(formula=formula).flatten()
formula_terms = _leaf_collector(terms)
return formula_terms
def _leaf_collector(term):
if isinstance(term, formulaic.parser.types.Token):
return [str(term)]
if type(term) is not list:
return []
return _leaf_collector(term[1]) + _leaf_collector(term[2])
We have added the formats included in this PR, but they still need comprehensive validation added to their respective formats.
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