let me know if I should provide additional info.
This plugin encountered an error:
Command '['ssu', '-i', '/tmp/qiime2/b
erntm/data/0181e66c-c1cd-4a8f-841f-b2
6e294cdf4f/data/feature-table.biom',
'-t', '/tmp/qiime2/berntm/data/095f38
0b-f423-4a9a-a922-70c3d6fc7284/data/t
ree.nwk', '-m', 'unweighted', '-o',
'/tmp/q2-LSMatFormat-jwa2_krh']'
returned non-zero exit status 1.
:(
Matplotlib created a temporary config/cache directory at /tmp/matplotlib-okxb46uu because the default path (/home/qiime2/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Current file: /opt/conda/conda-bld/unifrac-binaries_1664395747097/work/src/unifrac_cmp.cpp
function: _ZN6su_acc21UnifracUnweightedTaskIdE4_runEjPKd
line: 558
This file was compiled: -ta=tesla:cc35,cc50,cc60,cc60,cc70,cc75,cc80,cc80
/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/sklearn/metrics/pairwise.py:1776: DataConversionWarning: Data was converted to boolean for metric jaccard
warnings.warn(msg, DataConversionWarning)
/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.008521727917718724 and the largest is 5.200826700955479.
warn(
/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.0934827577673413 and the largest is 4.863627869126633.
warn(
Traceback (most recent call last):
File "/opt/conda/envs/qiime2-2023.5/bin/q2galaxy", line 11, in <module>
sys.exit(root())
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/click/core.py", line 1130, in __call__
return self.main(*args, **kwargs)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/click/core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2galaxy/__main__.py", line 98, in run
action_runner(plugin, action, config)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2galaxy/core/drivers/action.py", line 30, in action_runner
results = _execute_action(action, action_kwargs,
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2galaxy/core/drivers/stdio.py", line 38, in wrapped
return function(*args, **kwargs)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2galaxy/core/drivers/action.py", line 115, in _execute_action
return action(**action_kwargs)
File "<decorator-gen-176>", line 2, in core_metrics_phylogenetic
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/qiime2/sdk/action.py", line 274, in bound_callable
outputs = self._callable_executor_(
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/qiime2/sdk/action.py", line 590, in _callable_executor_
outputs = self._callable(scope.ctx, **view_args)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2_diversity/_core_metrics.py", line 66, in core_metrics_phylogenetic
dms += unweighted_unifrac(table=cr.rarefied_table, phylogeny=phylogeny,
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/qiime2/sdk/context.py", line 140, in deferred_action
return action_obj._bind(
File "<decorator-gen-724>", line 2, in unweighted_unifrac
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/qiime2/sdk/action.py", line 274, in bound_callable
outputs = self._callable_executor_(
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/qiime2/sdk/action.py", line 509, in _callable_executor_
output_views = self._callable(**view_args)
File "<decorator-gen-133>", line 2, in unweighted_unifrac
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 69, in _disallow_empty_tables
return wrapped_function(*args, **kwargs)
File "<decorator-gen-132>", line 2, in unweighted_unifrac
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 112, in _validate_requested_cpus
return wrapped_function(*bound_arguments.args, **bound_arguments.kwargs)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2_diversity_lib/beta.py", line 221, in unweighted_unifrac
_omp_cmd_wrapper(threads, cmd)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 128, in _omp_cmd_wrapper
return _run_external_cmd(cmd, verbose=verbose, env=env)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 122, in _run_external_cmd
return subprocess.run(cmd, check=True, env=env)
File "/opt/conda/envs/qiime2-2023.5/lib/python3.8/subprocess.py", line 516, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['ssu', '-i', '/tmp/qiime2/berntm/data/0181e66c-c1cd-4a8f-841f-b26e294cdf4f/data/feature-table.biom', '-t', '/tmp/qiime2/berntm/data/095f380b-f423-4a9a-a922-70c3d6fc7284/data/tree.nwk', '-m', 'unweighted', '-o', '/tmp/q2-LSMatFormat-jwa2_krh']' returned non-zero exit status 1.