Comments (8)
Thank you Florian! Always super helpful!
from bigstatsr.
I guess you want something similar to #73?
from bigstatsr.
Yes, something like
backingfile Path to the file storing the Big Matrix on disk. An extension ".bk" will be automatically added. Default stores in the temporary directory.
as you have in FBM
.
If I were to use the workaround you suggested in the other issue, would I be able to specify the backing file name? Or only the directory?
from bigstatsr.
That would be only the directory.
I could definitely push something, but as this is quite easy to do, I was waiting for someone that wanted to contribute to the package with a PR.
from bigstatsr.
I see. Thanks for your help!
from bigstatsr.
Do you want to try?
Otherwise, I can probably push something for big_cor()
tomorrow.
from bigstatsr.
Unfortunately, I am swamped :(
from bigstatsr.
This is now implemented in the latest GitHub version of the package.
from bigstatsr.
Related Issues (20)
- Predicting using only 1 specific lambda value HOT 2
- Fixed and random effect HOT 6
- Perform `colSums(X^2)` on FBM object HOT 2
- Variable selection HOT 6
- How to get p-value out of gwas<-big_univLinReg(...) object? HOT 10
- How to ensure indices of response are aligned with the genotype matrix in big_univLogReg? HOT 6
- Binary traits problem HOT 1
- The result is NA HOT 12
- How to delete a .bk file during a session HOT 2
- Is there a function similar to rbind(), cbind() but for FBM objects HOT 2
- How to use big_apply properly HOT 4
- How to cbind/rbind two big matrices that have the same dimension HOT 9
- Issues with locking of the backing file HOT 6
- Implementation of `dimnames` for FBM matrices HOT 2
- Scaling predictor variables both in training and test datasets HOT 5
- Error in `big_cor()` when using `block.size = 1`
- Extracting scores from each inner validation HOT 2
- control MAF filtering? HOT 3
- big_prodMat throws takes a really long time and finally throws an out-of-memory error HOT 6
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from bigstatsr.