Comments (1)
Hi,
- The implementation provided is not suitable for running with only a few variables (SNPs); it's more for 100s of 1000s of variables. You should probably directly run {glmnet} instead, or even just standard logistic regression (without penalization).
- LASSO is known to be not particularly stable in its selection of variables.
- Have a look at the {glmnet} vignette to find more suitable models; but discussing variable selection is out-of-scope of the help I provide here, sorry.
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Related Issues (20)
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