Website: FieldNBalance
Nitrogen balance model components and test procedures
Nitrogen balance model components and test procedures
Home Page: https://plant-food-research-open.github.io/FieldNBalance/
License: GNU General Public License v3.0
Website: FieldNBalance
Nitrogen balance model components and test procedures
I've added some scaffold code for unit testing here: https://github.com/Plant-Food-Research-Open/FieldNBalance/blob/main/SVSModel.Tests/SVSModelTest.cs
This works fine. Most recent test results from GitHub Actions: https://github.com/Plant-Food-Research-Open/FieldNBalance/runs/21364924990
Anyway, I'll let this one sit until you can secure and add the validation data - or we can plan out the required unit tests in more detail
It should not be necessary to pass the met data in through the interface as all the data is in the source code. Could easily refactor so the model gets its met data locally from the metfile name provided in the interface.
Regarding the issue with the matplotlib graphs...
The issue is specific to Moisture test sets and graphs
In https://github.com/Plant-Food-Research-Open/FieldNBalance/blob/main/TestGraphs/MakeGraphs/Moisture.py#L40, you're loading your test sets from the TestComponents/TestSets/Moisture/OutPuts subdirectory
If I read the test set data from OutPuts, and use that to generate visualisations, then the graphs look ok: https://plant-food-research-open.github.io/FieldNBalance/
That's where your Moisture test sets are currently stored: https://github.com/Plant-Food-Research-Open/FieldNBalance/tree/main/TestComponents/TestSets/Moisture/OutPuts
However, in the current pipeline, the Moisture test sets will be written to the TestComponents/TestSets/Moisture/Outputs subdirectory. After this happens, the visualisations look strange...with overlapping points
All the other test sets are written to and plotted from an Outputs subdirectory. So this is basically a typo that's specific to Moisture
Anyway, I think we have a data quality issue with the generated Moisture test set data (duplicate data maybe?). I'm not familiar enough with this data to help, so you'll probably need to inspect it yourself
Add table with drainage coefficients for each met site and mechinisum to read them into the model
Currently the model requires soil test results in kg N/ha requiring the client web app to calculate this from test results. It would be better in the long run to bring these calculations into the code so the client only needs to provide the information inputs to these calculations through the UI.
WS1 Data
HWEON project test set
Incorporate data from WS1 analysis
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<one line to give the program's name and a brief idea of what it does.>
Author: Hamish Brown
Copyright (c) 2024 The New Zealand Institute for Plant and Food Research Limited
Add final coefficients for residue model from fitting
The model is currently structured to calculate each of the components for the duration of the simulation and then stick them together to do the N balance. This worked well when the model was quite simple. However, we have had to add more complexity into the loss model and feedbacks to reduce uptake if soil N is limited which has resulted in a code structure that is quite hard to read.
It would be better to turn this into a true daily time-step model so it is easier to follow for others needing to ready of debug the code in the future.
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