Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree with the FLI-LICENSE included in the package.
Hi,
i'm using RepARK to create repeat library.
So, as you indicated in your read file, sometime it necesseray to change the treshold value -t .
I want to know how do i must choose the righ(best) one.
Thank you
When i try to use RepARK.pl for de novo identification of repetitive elements in my DNA sequencing data, there is something wrong. The errors are as follows:
Merging dbs with: jellyfish merge -s 100000000 -o mergedjellyfish.db jellyfish_*
Illegal division by zero at RepARK.pl line 602.
Couldn't calculate left threshold. Try adjusting the coverage or check your histogram file!