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BlastViewer

License

Introduction

This is the BlastViewer Tool. It aims at displaying in a graphical way results from the NCBI BLAST software.

BlastViewer

BlastViewer

Starting with release 5.5.0, BlastViewer is now capable of importing and displaying InterProScan predictions:

BlastViewer

Requirements

Use a Java Virtual Machine 1.8+ from Oracle.

Not tested with any other JVM providers but Oracle... so there is no guarantee that the software will work as expected if not using Oracle's JVM.

User manual

See the Wiki page of this project.

License and dependencies

BlastViewer itself is released under the GNU Affero General Public License, Version 3.0. AGPL

It depends on several thrid-party libraries as stated in the NOTICE.txt file provided with this project.

Once upon a time was: VisualBlast / KoriBlast / ngKLAST

During Summer 2004 I was asking myself how easy it could be to rewrite in Java the original VisualBlast software written in C for the MS-Windows platform.

Actually, the answer was quite immediate: it took me a few days to fully rewrite Visual Blast, thanks to the many libraries available, mostly from Sun MicroSystems and the Apache Software Foundation.

So, during my holidays on Summer 2004, I started a wonderful story: the creation of what would eventually become the KoriBlast/ngKLAST suite of softwares, the founding software of my company, Korilog.

Korilog ceased its activities on June 2015, therefore I decided to release these UI components to the open source community... just in time for Christmas 2016! ;-)

-- (c) 2003-2020 - Patrick G. Durand

blastviewer's People

Contributors

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blastviewer's Issues

reorder columns

Hello, @pgdurand

I would like to thank you for the great work with BlastViewer and ask if a way to reorder columns could be implemented.
Thank you.

Cheers.
David

Add Plugin API

Setup a simple API to enable the add of Viewers as external plugins.

Name in the Graphic tab when showing results from multiple queries

Thank you for developing this tool.
Really like it. I even tweeted about it.
https://twitter.com/StevenXGe/status/1145054748384681984

One minor thing I found is this. I have two queries. When I switch from to show results for query 1 to query 2, everything switches fine in the Hits tabs. However, one thing that is not changed is the Name and Size information on the Graphic tab. The ruler on the top doesn't seem updated either.

Thanks.
Xijin

Add JWS support

as the title implied... just check what is the future of JWS with recent and coming Oracle JRE.

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