Java tools for analyzing Drop-seq data
Drop-seq questions may be directed to [email protected].
You may also use this address to be added to the Drop-seq Google group.
See https://github.com/broadinstitute/Drop-seq/releases to download binaries.
See Drop-seq alignment cookbook for detailed usage of these tools.
See Census-seq computational protocols for detailed usage of Census-Seq tools.
Download source:
git clone https://github.com/broadinstitute/Drop-seq.git
cd Drop-seq
There are two options for building and installing.
- Build the executable jarfile, a single wrapper script from which all command-line programs can be invoked, installed in the cloned git sandbox.
- Build a zipfile containing the executable jarfile and wrapper scripts for all command-line programs. The zipfile can be installed in an arbitrary location.
./gradlew installDist
The wrapper script will be dropseq/build/install/dropseq/bin/dropseq
. dropseq.bat
for Windows.
./gradlew distZip
unzip -d <install-location> ./dropseq/build/distributions/dropseq-<version>.zip
Note that the name of the zipfile will be based on the tagged version and state of your git sandbox.
The files will be deployed into a subdirectory of <install-location>
above, with name based on the name of the zipfile.