A Firekube distribution for inferencing COVID-19 using COVID-Net.

We provide several ways to use FK-Covid. The easiest way is:

• Download our standalone fk-covid-app from https://github.com/weaveworks/fk-covid/releases/download/v0.1.1/fk-covid-app,
• Change its mode to be executable (chmod +x fk-covid-app),
• And run it fk-covid-app.

It will bring up a Firekube cluster with all components installed. Then run kubectl get svc -n kubeflow to get IPs for accessing the UI and the object storage.

Please fork this repository, then clone it into your local machine,

git clone github.com:<your user>/fk-covid

Then run the setup.sh

cd fk-covid
./setup.sh

To use fk-covid on EKS, first please start an EKS cluster with eksctl:

eksctl create cluster eks-covid \
  --node-type=m5.large \
  --nodes=2 \
  --node-volume-size=120 \
  --region=us-west-2 \
  --timeout=40m

Then create your GitHub repository to store GitOps configuration. You can do it via the GItHub console, or using this script.

mkdir eks-covid
cd eks-covid
git init
hub create <user>/eks-covid

After you got the EKS cluster running, enable GitOps using the following commands.

EKSCTL_EXPERIMENTAL=true eksctl \
    enable repo \
    [email protected]:<user>/eks-covid \
    [email protected]  \
    --cluster=eks-covid \
    --region=us-west-2

Then install the COVID ML Profile, which is a portable profile containing all FK-Covid components.

EKSCTL_EXPERIMENTAL=true eksctl \
    enable profile \
    [email protected]:<user>/eks-covid \
    [email protected] \
    --cluster=eks-covid \
    --region=us-west-2 \
    [email protected]:weaveworks/covid-ml-profile

After the profile installed, wait until all PODs ready and FK-Covid can be accessed via URLs retrieved from kubectl get svc -n kubeflow.

Please create an AKS cluster and install the AKS version of COVID ML Profile from this repo: https://github.com/berndverst/covid-net-azure-profile