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License: Apache License 2.0
Parallel k-mer indexing for biological sequences
License: Apache License 2.0
I am having trouble compiling kmerind. The errors have to do with missing dependencies. Here is what I have tracked down so far:
kmerind-build/tommyds ( https://github.com/amadvance/tommyds )
kmerind-build/sparsehash ( https://github.com/sparsehash/sparsehash )
kmerind-build/mxx ( https://github.com/patflick/mxx )
I am not sure I grabbed the right versions but using the Master branches from the above I am able to get past all the missing files. Now I am against some macro problems ( perhaps a problem with the versions I used above? ):
In file included from /home/rhubley/projects/kmerind-TCBB/src/containers/fsc_container_utils.hpp:32:0,
from /home/rhubley/projects/kmerind-TCBB/src/containers/densehash_map.hpp:44,
from /home/rhubley/projects/kmerind-TCBB/test/benchmark/BenchmarkHashTables.cpp:18:
/home/rhubley/projects/kmerind-TCBB/test/benchmark/BenchmarkHashTables.cpp: In function 'int main(int, char**)':
/home/rhubley/projects/kmerind-TCBB/test/benchmark/BenchmarkHashTables.cpp:1208:27: error:'test' was not declared in this scope
BL_BENCH_COLLECTIVE_END(test, "unordered_map", count, comm);
^
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