openvax Goto Github PK
Name: OpenVax
Type: Organization
Bio: Open source software for personalized cancer vaccines
Location: New York, NY
Name: OpenVax
Type: Organization
Bio: Open source software for personalized cancer vaccines
Location: New York, NY
Cell line HLA types and neoepitope catalog from TCLP
Quick analysis to associate SARS-Cov-2 spike mutations with pangolin lineages using GISAID data
Helpers for transparently downloading datasets
Mirror of GTF and FASTA data from the Ensembl FTP servers
Reference genomes and related files used across repos and analyses
Gene lists related to cancer immunotherapy
Parsing tools for GTF (gene transfer format) files
List of published peptide ligands for HLA-E
Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
Class II MHC data
MHC class II binding predictor, under development
Class II MHC binding and antigen processing prediction
Peptide-MHC I binding affinity prediction
Motifs for MHC I alleles as predicted by MHCflurry
Webapp for MHCflurry predictor
All the fun and adventure of MHC naming, now in Python
Python interface to running command-line and web-based MHC binding predictors
Predict expression of cancer mutations from simple DNA features such as DNA variant allele-frequency
Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Test which use the whole python genomics / immunology software stack that can be included with each project
Template for a new OpenVax Python project
openvax.github.io
Machine readable data from "An Immunogenic Personal Neoantigen Vaccine for Melanoma Patients"
Python interface to amino acid properties and IEDB
Neural networks for amino acid sequences
PhIP-seq data analysis workflow
Predicting allele-specific expression of somatic mutations from DNA features
Common interface to protein design tools and structure predictors
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.