Comments (2)
it would be easier to find the problem if you provide some minimum demo data to reproduce your case. I guess low base/mapping quality, orphan read, and too much depth could be common reasons.
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Thanks for the reply.
I upload the demo data which was extracted from my case, so that you can take a look.
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Related Issues (15)
- TODO: generate HTML report HOT 1
- Feature request: add txt output and coverage information to the mutations HOT 2
- Retrieve readids supporting mutations.
- the latest mutscan cannot be work with VEP-annoated vcf ?
- Deadlock with the --thread option
- How to use `mutscan` with UMI ? HOT 1
- Missing reads with `--simplified on`
- How to make VCF-format mutation file ?
- Build error with g++ 6.6.1 on RHEL 6.5 HOT 1
- compile error HOT 7
- About VCF format HOT 2
- HTML report can't work while copy it to windows, and may be a output directory needed. HOT 12
- Manuscript/Preprint? HOT 2
- MutScan didn't find any mutation HOT 5
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