opengene / defq Goto Github PK
View Code? Open in Web Editor NEWPlease switch to https://github.com/OpenGene/defastq
License: MIT License
Please switch to https://github.com/OpenGene/defastq
License: MIT License
I downloaded the defastq software through this link:
http://opengene.org/defastq/defastq
What is the difference between defq and defastq software?
Hi, I don't understand what is wrong ...
I have a fastq file with the following sequences. (My barcode is under bracket):
@MN00591:192:000H332YK:1:11102:20930:2477 1:N:0:1
GCCCCCAAAATCAGCGAAATGGGCGCCATTGGTGATGACACCAGGCATCAGAATAAATGTTGTCGGCGAGATATTTGTCGGTCCCAGACTTTCGCTGAACGGCCACGGAGATAGGGCTAGGAGTAACCAGAATGGAGAACGC [ATATCATTAACAGAG] GGTACGCTCATCAGAATTAACC
+
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
My barcode file contains the barcode :
#filename,#index1,#index2
A11,ATATCATTAACAGAG,
H10,ATTAATAGTGGTATG,
But the following command keep creating 0 bytes files.
defq -i file.fastq -o demux_out_dir -s index.csv -f .fastq -z 1
When I extract the fq.gz from size 30G data(fq.gz), the memory will be large, was killed by the system.
defq.sh: line 2: 95033 Killed /Bioinfo/tools/defq --in1 Undetermined_S0_R1_001.fastq.gz -s /Task/OUT/index2.sheet -o /Task/OUT/P5index -f _R1.fastq.gz
15024 fastq 20 0 70.4g 70g 1420 S 2368.2 55.7 456:49.89 defq
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.