- conda
git clone https://github.com/On-JungWoan/PLINK-python.git
cd PLINK-python
conda create -n plink-env python==3.9
conda activate plink-env
pip install -r requirements.txt
python main.py --mode linear
python main.py --mode Logistic
!! Need to modify it !!
| args | description |
|---|---|
| --path | Manually specify the project path. |
| --mode | Specify the regression mode(linear or logistic). |
| --file | Specify the file format to be used.(bim or fam). |
| --nosave | If this argument is used, the result will not be saved |
| --save_dir | |
| --full_dataset | If this argument is true, dataset made by all dataset. |
| --num_col | Option of full_dataset == false, selection of dataset's size. |
| --save_plot | If this argument is True, manhattan plot will be saved |
| -- |
Examples
python main.py \
--path your/prj/path \
--mode linear (or logistic) \
--file bim (or fam) \
--nosave
--save_plot True \
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