Omid Gholamalamdari 5/24/2019

This work is in progress and unpublished. Feel free to use it at your own risk.

For a brief description of the method see: Intro_to_module.pdf

We are often interested in finding the relative distance of genomic loci with respect to a nuclear compartment (e.g. Nuclear Speckles, Nucleoulus) in our microscopic experiments. The idea behind this module is formed based on conversations between Dr. Andrew Belmont’s lab members. Please acknowledge/cite (Our future paper).

• Make sure you have an up-to-date version of FIJI/ImageJ.
• Download the repository.
• For Windows: copy the “Loci_Compartment_Distance.py” to "path_to_imageJ\plugins".
• For mac: right-click on FIJI in your applications folder -> Show package contents -> copy the “Loci_Compartment_Distance.py” in the plugins folder.
• Once FIJI restarted, you can find it under the plugins menu.