Comments (4)
bwalsh
commented on August 15, 2024
Thanks Alex. Do you have any indication what source (civic,cgi,...) this happened on?
@ahwagner
from g2p-aggregator.
ahwagner
commented on August 15, 2024
It happened very early in the run, on cgi, though it may not be source-specific, as it was the first source evaluated. Full log here:
(py27) Wagner-MBP:harvester awagner$ python harvester.py --harvesters cgi_biomarkers jax civic oncokb pmkb molecularmatch -i g2p |tee harvest.log
2017-08-01 00:34:19,695 - root - INFO - harvesters: ['cgi_biomarkers', 'jax', 'civic', 'oncokb', 'pmkb', 'molecularmatch']
2017-08-01 00:34:19,695 - root - INFO - silos: ['elastic']
2017-08-01 00:34:19,695 - root - INFO - elastic_search: 'localhost'
2017-08-01 00:34:19,696 - root - INFO - elastic_index: 'g2p'
2017-08-01 00:34:19,696 - root - INFO - delete_index: False
2017-08-01 00:34:19,696 - root - INFO - genes: all
2017-08-01 00:34:19,764 - root - INFO - cgi_biomarkers ['ABL1'] D
2017-08-01 00:34:20,360 - root - INFO - cgi_biomarkers ['ABL1'] D
2017-08-01 00:34:20,409 - root - INFO - cgi_biomarkers ['ABL1'] D
2017-08-01 00:34:20,453 - root - INFO - cgi_biomarkers ['ABL1'] D
2017-08-01 00:34:20,499 - root - INFO - cgi_biomarkers ['ABL1'] D
2017-08-01 00:34:20,551 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:20,631 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:20,694 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:20,756 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:20,822 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:20,884 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:20,948 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,016 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,080 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,158 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,240 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,323 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,403 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,480 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,555 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,632 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,711 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,791 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,874 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:21,952 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,035 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,112 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,187 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,265 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,345 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,423 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,501 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,610 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,709 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,789 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,865 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:22,941 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,019 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,103 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,180 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,260 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,336 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,416 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,493 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,572 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,648 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,725 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,813 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,891 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:23,970 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,049 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,130 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,212 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,290 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,366 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,447 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,522 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,602 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,681 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,758 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,837 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,914 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:24,991 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,071 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,151 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,228 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,306 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,386 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,465 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,540 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,616 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,695 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,773 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,851 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:25,928 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,005 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,082 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,174 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,253 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,333 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,410 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,486 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,561 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,642 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,722 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,798 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,877 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:26,957 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,038 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,120 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,198 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,277 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,354 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,443 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,523 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,599 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,676 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,758 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,840 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,920 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:27,996 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,074 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,152 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,238 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,317 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,397 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,466 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,533 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,596 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,662 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,725 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,790 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,902 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:28,972 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,037 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,099 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,162 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,225 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,291 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,356 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,420 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,482 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,543 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,605 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,671 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,740 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,800 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,866 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,931 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:29,994 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,057 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,119 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,184 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,270 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,334 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,401 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,467 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,532 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,592 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,656 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,718 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,804 - root - INFO - cgi_biomarkers ['ABL1'] A
2017-08-01 00:34:30,887 - root - INFO - cgi_biomarkers ['ABL1'] D
2017-08-01 00:34:31,057 - root - ERROR - http://disease-ontology.org/query_tree?search=True&node=HP:0000001 <Response [500]> No JSON object could be decoded
2017-08-01 00:34:31,074 - root - INFO - cgi_biomarkers ['AKT1'] C
2017-08-01 00:34:31,858 - root - INFO - cgi_biomarkers ['AKT1'] C
2017-08-01 00:34:32,554 - root - INFO - cgi_biomarkers ['AKT1'] C
2017-08-01 00:34:49,877 - root - WARNING - normalize_drugs NOFIND PI3K pathway inhibitors
2017-08-01 00:34:49,900 - root - INFO - cgi_biomarkers ['AKT1'] C
2017-08-01 00:34:54,203 - root - WARNING - normalize_drugs NOFIND Tensirolimus (MTOR inhibitor)
2017-08-01 00:34:54,226 - root - INFO - cgi_biomarkers ['AKT1'] D
2017-08-01 00:34:54,860 - root - INFO - cgi_biomarkers ['AKT1'] C
2017-08-01 00:34:56,194 - root - INFO - cgi_biomarkers ['AKT1'] D
2017-08-01 00:34:56,674 - root - INFO - cgi_biomarkers ['AKT1'] C
2017-08-01 00:34:56,919 - root - INFO - cgi_biomarkers ['AKT2'] D
2017-08-01 00:34:58,216 - root - INFO - cgi_biomarkers ['AKT3'] D
2017-08-01 00:35:01,338 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:02,393 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:03,244 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:03,740 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:04,813 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:05,904 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:07,391 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:07,639 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:07,867 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:08,101 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:08,140 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:08,181 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:08,220 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:08,263 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:08,302 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:08,341 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:08,383 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:09,976 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:10,021 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:10,064 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:10,110 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:10,153 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:10,191 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:10,229 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:10,266 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,121 - root - WARNING - normalize_drugs NOFIND Entrictinib (Pan-TK inhibitor)
2017-08-01 00:35:13,158 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:13,219 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,263 - root - INFO - cgi_biomarkers ['ALK'] A
2017-08-01 00:35:13,325 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,366 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:13,408 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:13,449 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:13,496 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:13,559 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:13,693 - root - INFO - cgi_biomarkers ['ALK'] D
2017-08-01 00:35:13,759 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,814 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,861 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,900 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,942 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:13,980 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:14,022 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:14,068 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:14,108 - root - INFO - cgi_biomarkers ['ALK'] C
2017-08-01 00:35:14,147 - root - INFO - cgi_biomarkers ['APC'] D
2017-08-01 00:35:16,064 - root - WARNING - normalize_drugs NOFIND Tankyrase inhibitors
2017-08-01 00:35:16,097 - root - INFO - cgi_biomarkers ['AR'] D
2017-08-01 00:35:17,277 - root - INFO - cgi_biomarkers ['AR'] D
2017-08-01 00:35:17,335 - root - INFO - cgi_biomarkers ['AR'] D
2017-08-01 00:35:17,576 - root - INFO - cgi_biomarkers ['AR'] D
2017-08-01 00:35:17,619 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:18,618 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:18,672 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:18,711 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:18,752 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:19,006 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:19,252 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:19,291 - root - INFO - cgi_biomarkers ['AR'] C
2017-08-01 00:35:19,331 - root - INFO - cgi_biomarkers ['AR'] D
2017-08-01 00:35:19,762 - root - INFO - cgi_biomarkers ['AR', 'AR'] D
2017-08-01 00:35:19,814 - root - INFO - cgi_biomarkers ['ARAF'] C
2017-08-01 00:35:20,198 - root - INFO - cgi_biomarkers ['ARAF'] C
2017-08-01 00:35:21,024 - root - INFO - cgi_biomarkers ['ARAF'] C
2017-08-01 00:35:21,800 - root - INFO - cgi_biomarkers ['AREG'] C
2017-08-01 00:35:21,864 - root - INFO - cgi_biomarkers ['ARID1A'] D
2017-08-01 00:35:22,923 - root - INFO - cgi_biomarkers ['ARID1A'] D
2017-08-01 00:35:25,415 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:35:25,463 - root - INFO - cgi_biomarkers ['ARID1A', 'ANXA1'] C
2017-08-01 00:35:26,082 - root - INFO - cgi_biomarkers ['ARID1A', 'ANXA1'] C
2017-08-01 00:35:26,148 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:26,399 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:27,026 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:27,078 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:28,178 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:28,930 - root - INFO - cgi_biomarkers ['ATM'] D
2017-08-01 00:35:31,289 - root - WARNING - normalize_drugs NOFIND DNA-PKc inhibitors
2017-08-01 00:35:31,329 - root - INFO - cgi_biomarkers ['ATM'] D
2017-08-01 00:35:32,325 - root - WARNING - normalize_drugs NOFIND DNA-PKc inhibitors
2017-08-01 00:35:32,367 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:33,256 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:35:33,300 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:34,193 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:35:34,235 - root - INFO - cgi_biomarkers ['ATM'] C
2017-08-01 00:35:35,113 - root - INFO - cgi_biomarkers ['ATM'] D
2017-08-01 00:35:35,373 - root - INFO - cgi_biomarkers ['ATR'] D
2017-08-01 00:35:35,434 - root - INFO - cgi_biomarkers ['ATR'] D
2017-08-01 00:35:35,495 - root - INFO - cgi_biomarkers ['ATR'] D
2017-08-01 00:35:35,548 - root - INFO - cgi_biomarkers ['AURKA'] D
2017-08-01 00:35:38,026 - root - WARNING - normalize_drugs NOFIND AURK inhibitors
2017-08-01 00:35:38,070 - root - INFO - cgi_biomarkers ['B2M'] C
2017-08-01 00:35:38,897 - root - INFO - cgi_biomarkers ['BAP1'] D
2017-08-01 00:35:39,593 - root - INFO - cgi_biomarkers ['BAP1'] D
2017-08-01 00:35:40,348 - root - INFO - cgi_biomarkers ['BAP1'] D
2017-08-01 00:35:42,898 - root - WARNING - normalize_drugs NOFIND HDAC inhibitors
2017-08-01 00:35:42,944 - root - INFO - cgi_biomarkers ['BAP1'] D
2017-08-01 00:35:43,841 - root - WARNING - normalize_drugs NOFIND HDAC inhibitors
2017-08-01 00:35:43,881 - root - INFO - cgi_biomarkers ['BAP1'] D
2017-08-01 00:35:44,765 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:35:44,789 - root - INFO - cgi_biomarkers ['BAP1'] D
2017-08-01 00:35:45,694 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:35:45,718 - root - INFO - cgi_biomarkers ['BCL2'] D
2017-08-01 00:35:45,965 - root - INFO - cgi_biomarkers ['BCL'] C
2017-08-01 00:35:46,630 - root - INFO - cgi_biomarkers ['BCL6'] C
2017-08-01 00:35:46,863 - root - INFO - cgi_biomarkers ['BCOR'] D
2017-08-01 00:35:47,471 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:35:47,707 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:35:47,751 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:35:47,794 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:35:47,835 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:35:47,876 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:48,601 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:48,855 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:35:50,213 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:35:52,327 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:35:54,385 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:35:55,002 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:55,707 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:56,146 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:56,792 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:56,872 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:57,102 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:57,606 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:58,079 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:58,118 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:35:58,160 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:00,554 - root - WARNING - normalize_drugs NOFIND Pan-RAF inhibitors
2017-08-01 00:36:00,577 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:00,622 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:00,680 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:01,580 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:01,620 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:01,662 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:01,905 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:01,969 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:02,217 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:02,878 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:03,562 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:03,612 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:03,661 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:03,709 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:03,756 - root - INFO - cgi_biomarkers ['BRAF'] B
2017-08-01 00:36:03,992 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:04,035 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:04,077 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:05,221 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:05,313 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:05,395 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:05,471 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:05,551 - root - INFO - cgi_biomarkers ['BRAF'] B
2017-08-01 00:36:05,615 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:05,685 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:05,754 - root - INFO - cgi_biomarkers ['BRAF'] D
2017-08-01 00:36:05,819 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:05,880 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:05,943 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,006 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:06,064 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,121 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,179 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,235 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,292 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,348 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,405 - root - INFO - cgi_biomarkers ['BRAF'] C
2017-08-01 00:36:06,463 - root - INFO - cgi_biomarkers ['BRAF'] A
2017-08-01 00:36:06,539 - root - INFO - cgi_biomarkers ['BRAF', 'EGFR'] D
2017-08-01 00:36:07,281 - root - INFO - cgi_biomarkers ['BRCA1'] C
2017-08-01 00:36:07,346 - root - INFO - cgi_biomarkers ['BRCA1'] C
2017-08-01 00:36:09,320 - root - INFO - cgi_biomarkers ['BRCA1'] C
2017-08-01 00:36:13,493 - root - WARNING - normalize_drugs NOFIND PARP inhibitor + Chemotherapys
2017-08-01 00:36:13,553 - root - INFO - cgi_biomarkers ['BRCA1'] A
2017-08-01 00:36:13,610 - root - INFO - cgi_biomarkers ['BRCA1'] B
2017-08-01 00:36:14,114 - root - INFO - cgi_biomarkers ['BRCA1'] A
2017-08-01 00:36:14,370 - root - INFO - cgi_biomarkers ['BRCA1'] C
2017-08-01 00:36:14,629 - root - INFO - cgi_biomarkers ['BRCA1'] D
2017-08-01 00:36:15,497 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:36:15,539 - root - INFO - cgi_biomarkers ['BRCA1'] C
2017-08-01 00:36:16,423 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:36:16,466 - root - INFO - cgi_biomarkers ['BRCA1'] C
2017-08-01 00:36:17,563 - root - INFO - cgi_biomarkers ['BRCA1'] C
2017-08-01 00:36:17,628 - root - INFO - cgi_biomarkers ['BRCA2'] C
2017-08-01 00:36:17,687 - root - INFO - cgi_biomarkers ['BRCA2'] C
2017-08-01 00:36:18,162 - root - INFO - cgi_biomarkers ['BRCA2'] C
2017-08-01 00:36:19,535 - root - WARNING - normalize_drugs NOFIND PARP inhibitor + Chemotherapys
2017-08-01 00:36:19,567 - root - INFO - cgi_biomarkers ['BRCA2'] C
2017-08-01 00:36:19,613 - root - INFO - cgi_biomarkers ['BRCA2'] B
2017-08-01 00:36:20,118 - root - INFO - cgi_biomarkers ['BRCA2'] A
2017-08-01 00:36:20,156 - root - INFO - cgi_biomarkers ['BRCA2'] C
2017-08-01 00:36:20,328 - root - INFO - cgi_biomarkers ['BRCA2'] C
2017-08-01 00:36:20,376 - root - INFO - cgi_biomarkers ['BRCA2'] D
2017-08-01 00:36:20,424 - root - INFO - cgi_biomarkers ['BRCA2'] A
2017-08-01 00:36:20,466 - root - INFO - cgi_biomarkers ['BRCA2'] C
2017-08-01 00:36:20,944 - root - INFO - cgi_biomarkers ['BTK'] C
2017-08-01 00:36:22,848 - root - INFO - cgi_biomarkers ['BTK'] C
2017-08-01 00:36:22,889 - root - INFO - cgi_biomarkers ['C15orf55'] C
2017-08-01 00:36:23,523 - root - INFO - cgi_biomarkers ['CA9'] D
2017-08-01 00:36:23,786 - root - INFO - cgi_biomarkers ['CBL'] D
2017-08-01 00:36:24,412 - root - INFO - cgi_biomarkers ['CBL'] D
2017-08-01 00:36:24,671 - root - INFO - cgi_biomarkers ['CBL'] D
2017-08-01 00:36:24,732 - root - INFO - cgi_biomarkers ['CBL'] D
2017-08-01 00:36:24,790 - root - INFO - cgi_biomarkers ['CCND1'] C
2017-08-01 00:36:27,186 - root - INFO - cgi_biomarkers ['CCND1'] D
2017-08-01 00:36:28,152 - root - INFO - cgi_biomarkers ['CCND1'] D
2017-08-01 00:36:29,211 - root - INFO - cgi_biomarkers ['CCND2'] D
2017-08-01 00:36:30,212 - root - INFO - cgi_biomarkers ['CCND2'] C
2017-08-01 00:36:30,443 - root - INFO - cgi_biomarkers ['CCND3'] D
2017-08-01 00:36:31,376 - root - INFO - cgi_biomarkers ['CCNE1'] D
2017-08-01 00:36:32,091 - root - INFO - cgi_biomarkers ['CD274'] C
2017-08-01 00:36:32,702 - root - INFO - cgi_biomarkers ['CD274'] C
2017-08-01 00:36:32,937 - root - INFO - cgi_biomarkers ['CD274'] C
2017-08-01 00:36:33,166 - root - INFO - cgi_biomarkers ['CD274'] D
2017-08-01 00:36:35,208 - root - INFO - cgi_biomarkers ['CD69'] D
2017-08-01 00:36:36,197 - root - INFO - cgi_biomarkers ['CDH1'] D
2017-08-01 00:36:36,239 - root - INFO - cgi_biomarkers ['CDK12'] D
2017-08-01 00:36:38,047 - root - WARNING - normalize_drugs NOFIND PARP inhibitorss
2017-08-01 00:36:38,072 - root - INFO - cgi_biomarkers ['CDK12'] D
2017-08-01 00:36:38,972 - root - WARNING - normalize_drugs NOFIND PARP inhibitorss
2017-08-01 00:36:38,996 - root - INFO - cgi_biomarkers ['CDK4'] C
2017-08-01 00:36:40,399 - root - INFO - cgi_biomarkers ['CDK4'] C
2017-08-01 00:36:40,891 - root - INFO - cgi_biomarkers ['CDK4', 'RB1'] C
2017-08-01 00:36:41,682 - root - ERROR - http://disease-ontology.org/query_tree?search=True&node=UBERON:0001833 <Response [500]> No JSON object could be decoded
2017-08-01 00:36:41,703 - root - INFO - cgi_biomarkers ['CDK6'] D
2017-08-01 00:36:42,765 - root - INFO - cgi_biomarkers ['CDK6'] C
2017-08-01 00:36:43,259 - root - INFO - cgi_biomarkers ['CDK6'] C
2017-08-01 00:36:43,755 - root - INFO - cgi_biomarkers ['CDKN1A'] D
2017-08-01 00:36:45,202 - root - WARNING - normalize_drugs NOFIND CDK2/4 inhibitors
2017-08-01 00:36:45,228 - root - INFO - cgi_biomarkers ['CDKN1A'] D
2017-08-01 00:36:46,134 - root - WARNING - normalize_drugs NOFIND CDK2/4 inhibitors
2017-08-01 00:36:46,160 - root - INFO - cgi_biomarkers ['CDKN1B'] D
2017-08-01 00:36:47,072 - root - WARNING - normalize_drugs NOFIND CDK2/4 inhibitors
2017-08-01 00:36:47,100 - root - INFO - cgi_biomarkers ['CDKN1B'] D
2017-08-01 00:36:48,018 - root - WARNING - normalize_drugs NOFIND CDK2/4 inhibitors
2017-08-01 00:36:48,045 - root - INFO - cgi_biomarkers ['CDKN2A'] C
2017-08-01 00:36:49,005 - root - INFO - cgi_biomarkers ['CDKN2A'] C
2017-08-01 00:36:49,929 - root - INFO - cgi_biomarkers ['CDKN2A'] D
2017-08-01 00:36:50,830 - root - INFO - cgi_biomarkers ['CDKN2A'] D
2017-08-01 00:36:51,749 - root - INFO - cgi_biomarkers ['CDKN2A'] C
2017-08-01 00:36:52,750 - root - INFO - cgi_biomarkers ['CDKN2A'] C
2017-08-01 00:36:52,801 - root - INFO - cgi_biomarkers ['CDKN2B'] D
2017-08-01 00:36:53,720 - root - INFO - cgi_biomarkers ['CDKN2B'] D
2017-08-01 00:36:54,633 - root - INFO - cgi_biomarkers ['CDKN2C'] D
2017-08-01 00:36:55,321 - root - INFO - cgi_biomarkers ['CDKN2C'] D
2017-08-01 00:36:56,008 - root - INFO - cgi_biomarkers ['CHEK2'] C
2017-08-01 00:36:56,048 - root - INFO - cgi_biomarkers ['CHEK2'] C
2017-08-01 00:36:56,090 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:56,704 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:56,738 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:56,771 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:56,805 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:57,033 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:57,066 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:57,099 - root - INFO - cgi_biomarkers ['CRBN'] C
2017-08-01 00:36:57,132 - root - INFO - cgi_biomarkers ['CRLF2'] D
2017-08-01 00:36:57,888 - root - ERROR - http://disease-ontology.org/query_tree?search=True&node=HP:0000001 <Response [500]> No JSON object could be decoded
2017-08-01 00:36:57,909 - root - INFO - cgi_biomarkers ['CRLF2'] D
2017-08-01 00:36:59,441 - root - WARNING - normalize_drugs NOFIND MTOR inhibitors
2017-08-01 00:36:59,986 - root - ERROR - http://disease-ontology.org/query_tree?search=True&node=HP:0000001 <Response [500]> No JSON object could be decoded
2017-08-01 00:37:00,009 - root - INFO - cgi_biomarkers ['CSF1R'] D
2017-08-01 00:37:00,084 - root - INFO - cgi_biomarkers ['CSF3R'] D
2017-08-01 00:37:01,245 - root - INFO - cgi_biomarkers ['CSF3R'] D
2017-08-01 00:37:01,311 - root - INFO - cgi_biomarkers ['CSF3R'] D
2017-08-01 00:37:01,376 - root - INFO - cgi_biomarkers ['CSF3R'] D
2017-08-01 00:37:01,441 - root - INFO - cgi_biomarkers ['CSF3R'] D
2017-08-01 00:37:01,503 - root - INFO - cgi_biomarkers ['CTNNB1'] D
2017-08-01 00:37:02,403 - root - WARNING - normalize_drugs NOFIND Tankyrase inhibitors
2017-08-01 00:37:02,427 - root - INFO - cgi_biomarkers ['CTNNB1'] C
2017-08-01 00:37:03,429 - root - INFO - cgi_biomarkers ['CTNNB1'] C
2017-08-01 00:37:03,487 - root - INFO - cgi_biomarkers ['CTNNB1'] C
2017-08-01 00:37:03,543 - root - INFO - cgi_biomarkers ['CTNNB1'] C
2017-08-01 00:37:03,597 - root - INFO - cgi_biomarkers ['CYP17A1'] C
2017-08-01 00:37:03,636 - root - INFO - cgi_biomarkers ['CYP17A1'] C
2017-08-01 00:37:03,674 - root - INFO - cgi_biomarkers ['DDR2'] C
2017-08-01 00:37:03,737 - root - INFO - cgi_biomarkers ['DDR2'] D
2017-08-01 00:37:03,797 - root - INFO - cgi_biomarkers ['DDR2'] D
2017-08-01 00:37:03,858 - root - INFO - cgi_biomarkers ['DDR2'] D
2017-08-01 00:37:03,922 - root - INFO - cgi_biomarkers ['DDR2'] D
2017-08-01 00:37:03,983 - root - INFO - cgi_biomarkers ['DDR2'] D
2017-08-01 00:37:04,046 - root - INFO - cgi_biomarkers ['DDR2'] D
2017-08-01 00:37:04,105 - root - INFO - cgi_biomarkers ['DDR2'] C
2017-08-01 00:37:04,367 - root - INFO - cgi_biomarkers ['DNMT3A'] A
2017-08-01 00:37:04,609 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:05,227 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:05,264 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:05,299 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:10,214 - root - WARNING - normalize_drugs NOFIND Flourouracil (Fluoropyrimidine)
2017-08-01 00:37:10,242 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:11,154 - root - WARNING - normalize_drugs NOFIND Flourouracil (Fluoropyrimidine)
2017-08-01 00:37:11,180 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:12,051 - root - WARNING - normalize_drugs NOFIND Flourouracil (Fluoropyrimidine)
2017-08-01 00:37:12,079 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:12,303 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:12,339 - root - INFO - cgi_biomarkers ['DPYD'] A
2017-08-01 00:37:12,376 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:13,432 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:14,165 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:14,868 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:16,232 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:16,934 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:18,018 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:18,710 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:19,442 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:20,069 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:20,883 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:20,925 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:21,392 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:21,878 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:22,341 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:22,824 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:23,302 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:23,764 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:24,230 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:24,705 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:25,198 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:25,668 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:26,360 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:27,042 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:27,746 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:28,453 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:29,142 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:29,841 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:30,516 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:31,179 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:31,846 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:32,505 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:33,189 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:34,799 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:34,864 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:34,930 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:34,996 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:35,061 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:35,126 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:35,193 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:35,257 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:35,322 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:35,392 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:35,456 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,503 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,545 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:35,597 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,649 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,706 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,759 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,816 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,868 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:35,922 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:35,979 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,036 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,092 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,145 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,204 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:36,256 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:36,318 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:36,371 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:36,425 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,682 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,740 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,797 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,855 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,912 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:36,970 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,028 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,082 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,142 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,198 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,255 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,312 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,374 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,430 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,486 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,541 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,598 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,679 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,735 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,791 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:37,847 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:37,903 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:37,955 - root - INFO - cgi_biomarkers ['EGFR'] B
2017-08-01 00:37:38,008 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,258 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:38,313 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,359 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,406 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,450 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,498 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,542 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:38,587 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:38,632 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:38,677 - root - INFO - cgi_biomarkers ['EGFR'] D
2017-08-01 00:37:38,724 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,770 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:38,817 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:38,869 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:39,159 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:39,411 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:39,668 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:39,736 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:39,804 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:39,874 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:39,943 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,012 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,079 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,153 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,230 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,306 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,377 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,452 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,529 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,606 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,685 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,760 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,839 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,914 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:40,993 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:41,064 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:41,134 - root - INFO - cgi_biomarkers ['EGFR'] A
2017-08-01 00:37:41,203 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,290 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,379 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,466 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,557 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,649 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,741 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,831 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:41,920 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:42,013 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:42,108 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:42,196 - root - INFO - cgi_biomarkers ['EGFR'] C
2017-08-01 00:37:42,472 - root - INFO - cgi_biomarkers ['EPHA2'] D
2017-08-01 00:37:43,681 - root - WARNING - normalize_drugs NOFIND MTOR inhibitors
2017-08-01 00:37:43,705 - root - INFO - cgi_biomarkers ['EPHA2'] D
2017-08-01 00:37:43,769 - root - INFO - cgi_biomarkers ['EPHA2'] D
2017-08-01 00:37:43,827 - root - INFO - cgi_biomarkers ['EPHA2'] D
2017-08-01 00:37:44,714 - root - WARNING - normalize_drugs NOFIND MTOR inhibitors
2017-08-01 00:37:44,736 - root - INFO - cgi_biomarkers ['EPHA2'] D
2017-08-01 00:37:44,800 - root - INFO - cgi_biomarkers ['EPHA2'] D
2017-08-01 00:37:44,861 - root - INFO - cgi_biomarkers ['EPHA3'] D
2017-08-01 00:37:45,917 - root - INFO - cgi_biomarkers ['EPHA3'] D
2017-08-01 00:37:46,630 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:46,693 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:46,746 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:46,980 - root - INFO - cgi_biomarkers ['ERBB2'] B
2017-08-01 00:37:47,044 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:47,108 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:49,046 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:49,843 - root - INFO - cgi_biomarkers ['ERBB2'] B
2017-08-01 00:37:49,901 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:49,942 - root - INFO - cgi_biomarkers ['ERBB2'] B
2017-08-01 00:37:50,168 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:50,215 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:50,263 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:50,310 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:50,385 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:50,457 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:50,496 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:50,535 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:51,226 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:51,837 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,265 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,316 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,379 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,435 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,482 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,529 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,573 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:52,630 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:52,670 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:52,716 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:52,756 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:52,797 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:52,836 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:52,874 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:52,913 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:52,954 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:53,034 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:53,073 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:53,114 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:53,152 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:53,193 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:53,230 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:53,271 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:53,312 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:53,351 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:53,397 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:54,944 - root - WARNING - normalize_drugs NOFIND Tensirolimus (MTOR inhibitor)
2017-08-01 00:37:54,966 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:55,014 - root - INFO - cgi_biomarkers ['ERBB2'] A
2017-08-01 00:37:55,061 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:55,105 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,153 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,204 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,251 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,296 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,342 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,388 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,435 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,487 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,540 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,592 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,641 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,693 - root - INFO - cgi_biomarkers ['ERBB2'] D
2017-08-01 00:37:55,744 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:55,791 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:55,839 - root - INFO - cgi_biomarkers ['ERBB2'] C
2017-08-01 00:37:55,885 - root - INFO - cgi_biomarkers ['ERBB2', 'ESR1'] C
2017-08-01 00:37:56,106 - root - INFO - cgi_biomarkers ['ERBB2', 'ESR1'] A
2017-08-01 00:37:58,499 - root - INFO - cgi_biomarkers ['ERBB2', 'ESR1'] A
2017-08-01 00:37:58,539 - root - INFO - cgi_biomarkers ['ERBB2', 'ESR1'] A
2017-08-01 00:37:58,580 - root - INFO - cgi_biomarkers ['ERBB3'] C
2017-08-01 00:37:58,640 - root - INFO - cgi_biomarkers ['ERBB3'] C
2017-08-01 00:37:58,704 - root - INFO - cgi_biomarkers ['ERBB3'] C
2017-08-01 00:37:58,765 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:37:59,187 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:37:59,232 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:00,158 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:01,092 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,036 - root - INFO - cgi_biomarkers ['ERBB3'] C
2017-08-01 00:38:02,079 - root - INFO - cgi_biomarkers ['ERBB3'] C
2017-08-01 00:38:02,139 - root - INFO - cgi_biomarkers ['ERBB3'] C
2017-08-01 00:38:02,201 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,247 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,292 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,334 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,381 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,431 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,482 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,529 - root - INFO - cgi_biomarkers ['ERBB3'] D
2017-08-01 00:38:02,580 - root - INFO - cgi_biomarkers ['ERBB4'] C
2017-08-01 00:38:02,626 - root - INFO - cgi_biomarkers ['ERBB4'] D
2017-08-01 00:38:02,668 - root - INFO - cgi_biomarkers ['ERBB4'] D
2017-08-01 00:38:02,711 - root - INFO - cgi_biomarkers ['ERBB4'] D
2017-08-01 00:38:02,754 - root - INFO - cgi_biomarkers ['ERBB4'] D
2017-08-01 00:38:02,797 - root - INFO - cgi_biomarkers ['ERBB4'] D
2017-08-01 00:38:02,837 - root - INFO - cgi_biomarkers ['ERBB4'] D
2017-08-01 00:38:02,923 - root - INFO - cgi_biomarkers ['ERCC1'] D
2017-08-01 00:38:02,955 - root - INFO - cgi_biomarkers ['ERCC1'] D
2017-08-01 00:38:02,988 - root - INFO - cgi_biomarkers ['ERCC1'] D
2017-08-01 00:38:03,020 - root - INFO - cgi_biomarkers ['ERCC1'] D
2017-08-01 00:38:03,895 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:38:03,917 - root - INFO - cgi_biomarkers ['ERCC1'] D
2017-08-01 00:38:04,770 - root - WARNING - normalize_drugs NOFIND PARP inhibitors
2017-08-01 00:38:04,791 - root - INFO - cgi_biomarkers ['ERCC2'] C
2017-08-01 00:38:04,824 - root - INFO - cgi_biomarkers ['ERCC4'] D
2017-08-01 00:38:04,859 - root - INFO - cgi_biomarkers ['ERCC6'] D
2017-08-01 00:38:04,891 - root - INFO - cgi_biomarkers ['EREG'] C
2017-08-01 00:38:04,934 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:06,504 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:06,568 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:06,632 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:06,695 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:06,757 - root - INFO - cgi_biomarkers ['ESR1'] B
2017-08-01 00:38:06,798 - root - INFO - cgi_biomarkers ['ESR1'] B
2017-08-01 00:38:07,683 - root - INFO - cgi_biomarkers ['ESR1'] D
2017-08-01 00:38:08,790 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:08,831 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:08,871 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:08,910 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:08,949 - root - INFO - cgi_biomarkers ['ESR1'] C
2017-08-01 00:38:08,989 - root - INFO - cgi_biomarkers ['EZH2'] D
2017-08-01 00:38:11,244 - root - INFO - cgi_biomarkers ['EZH2'] D
2017-08-01 00:38:12,442 - root - INFO - cgi_biomarkers ['FANCA'] C
2017-08-01 00:38:12,484 - root - INFO - cgi_biomarkers ['FANCA'] C
2017-08-01 00:38:12,525 - root - INFO - cgi_biomarkers ['FANCC'] C
2017-08-01 00:38:12,557 - root - INFO - cgi_biomarkers ['FANCC'] C
2017-08-01 00:38:12,590 - root - INFO - cgi_biomarkers ['FAT1'] D
2017-08-01 00:38:12,833 - root - INFO - cgi_biomarkers ['FBXW7'] B
2017-08-01 00:38:13,522 - root - ERROR - http://disease-ontology.org/query_tree?search=True&node=HP:0000001 <Response [500]> No JSON object could be decoded
2017-08-01 00:38:13,543 - root - INFO - cgi_biomarkers ['FBXW7'] D
2017-08-01 00:38:15,375 - root - WARNING - normalize_drugs NOFIND Tubulin inhibitors
2017-08-01 00:38:15,410 - root - INFO - cgi_biomarkers ['FBXW7'] D
2017-08-01 00:38:16,268 - root - WARNING - normalize_drugs NOFIND Tubulin inhibitors
2017-08-01 00:38:16,293 - root - INFO - cgi_biomarkers ['FBXW7'] D
2017-08-01 00:38:16,336 - root - INFO - cgi_biomarkers ['FGF3'] C
2017-08-01 00:38:16,932 - root - INFO - cgi_biomarkers ['FGF3'] C
2017-08-01 00:38:17,164 - root - INFO - cgi_biomarkers ['FGF4'] C
2017-08-01 00:38:17,201 - root - INFO - cgi_biomarkers ['FGF4'] C
2017-08-01 00:38:17,242 - root - INFO - cgi_biomarkers ['FGFR1'] C
2017-08-01 00:38:18,704 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:18,726 - root - INFO - cgi_biomarkers ['FGFR1'] D
2017-08-01 00:38:19,606 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:19,629 - root - INFO - cgi_biomarkers ['FGFR1'] C
2017-08-01 00:38:19,679 - root - INFO - cgi_biomarkers ['FGFR2'] C
2017-08-01 00:38:20,553 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:20,576 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:21,591 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:21,614 - root - INFO - cgi_biomarkers ['FGFR2'] C
2017-08-01 00:38:22,517 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:22,538 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:22,621 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:22,702 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:22,781 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:22,862 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:22,945 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:23,023 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:23,103 - root - INFO - cgi_biomarkers ['FGFR2'] C
2017-08-01 00:38:24,006 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:24,030 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:24,916 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:24,938 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:25,820 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:25,842 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:26,742 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:26,768 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:27,689 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:27,711 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,606 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:28,627 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,670 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,710 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,753 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,791 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,833 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,875 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,916 - root - INFO - cgi_biomarkers ['FGFR2'] D
2017-08-01 00:38:28,954 - root - INFO - cgi_biomarkers ['FGFR3'] C
2017-08-01 00:38:29,841 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:29,864 - root - INFO - cgi_biomarkers ['FGFR3'] D
2017-08-01 00:38:30,727 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:30,749 - root - INFO - cgi_biomarkers ['FGFR3'] D
2017-08-01 00:38:31,627 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:31,651 - root - INFO - cgi_biomarkers ['FGFR3'] C
2017-08-01 00:38:32,550 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:32,573 - root - INFO - cgi_biomarkers ['FGFR3'] C
2017-08-01 00:38:33,478 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:33,501 - root - INFO - cgi_biomarkers ['FGFR3'] D
2017-08-01 00:38:36,438 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors (,etc)
2017-08-01 00:38:36,465 - root - INFO - cgi_biomarkers ['FGFR3'] D
2017-08-01 00:38:37,324 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:37,347 - root - INFO - cgi_biomarkers ['FGFR3'] D
2017-08-01 00:38:37,393 - root - INFO - cgi_biomarkers ['FGFR3'] D
2017-08-01 00:38:37,434 - root - INFO - cgi_biomarkers ['FGFR4'] D
2017-08-01 00:38:38,347 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:38,371 - root - INFO - cgi_biomarkers ['FGFR4'] D
2017-08-01 00:38:39,271 - root - WARNING - normalize_drugs NOFIND FGFR inhibitors
2017-08-01 00:38:39,293 - root - INFO - cgi_biomarkers ['FLCN'] C
2017-08-01 00:38:39,334 - root - INFO - cgi_biomarkers ['FLCN'] C
2017-08-01 00:38:39,378 - root - INFO - cgi_biomarkers ['FLT1'] D
2017-08-01 00:38:39,423 - root - INFO - cgi_biomarkers ['FLT1'] D
2017-08-01 00:38:39,469 - root - INFO - cgi_biomarkers ['FLT3'] D
2017-08-01 00:38:40,997 - root - INFO - cgi_biomarkers ['FLT3'] D
2017-08-01 00:38:41,248 - root - INFO - cgi_biomarkers ['FLT3'] C
2017-08-01 00:38:41,480 - root - INFO - cgi_biomarkers ['FLT3'] C
2017-08-01 00:38:41,671 - root - ERROR - string indices must be integers
Traceback (most recent call last):
File "/Users/awagner/Workspace/git/g2p-aggregator/harvester/drug_normalizer.py", line 211, in normalize
drugs = normalize_biothings(name)
File "/Users/awagner/Workspace/git/g2p-aggregator/harvester/drug_normalizer.py", line 134, in normalize_biothings
if product['approved'] == 'true':
TypeError: string indices must be integers
Traceback (most recent call last):
File "harvester.py", line 150, in <module>
main()
File "harvester.py", line 136, in main
normalize(feature_association)
File "harvester.py", line 124, in normalize
drug_normalizer.normalize_feature_association(feature_association)
File "/Users/awagner/Workspace/git/g2p-aggregator/harvester/drug_normalizer.py", line 240, in normalize_feature_association
ctx_drugs = normalize(ctx['description'])
File "/Users/awagner/Workspace/git/g2p-aggregator/harvester/drug_normalizer.py", line 227, in normalize
raise e
TypeError: string indices must be integers
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bwalsh
commented on August 15, 2024
commit 66d06a3 'improved error handling' should addresses this
@ahwagner can you confirm?
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ahwagner
commented on August 15, 2024
Looks good!
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Related Issues (20)
- Fix directionality
- Incorrect value provided for disease source field
- intuitive search HOT 13
- revisit civic evidence mapping
- add p. and g. descriptions to feature records HOT 2
- correctly harvest and normalize variants from Table 2 HOT 14
- static-html/_plugin/kibana/app/kibana 404 (Not Found) HOT 1
- where are the the indexs?
- schedule updates and provide "current dataset" downloads
- api port issue during installation HOT 3
- VICC-meta-knowledgebase /error/url-overflow bug on internet explorer HOT 1
- quotes on single term changes search result
- Reset search
- rename feature names from CIViC
- DO issues for CGI mapping
- Unable to load data to local cluster using harvester
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- What is the relationsihp between the VICC Meta-Knowledgebase and the GA4GH Variation Representation Specification? HOT 1
- Adjust default from / offset value
- Internet Explorer 11 failure
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