Comments (15)
@schuemie we basically used the same logic when creating this approach. On the other hand, we still want to keep precoordinated SNOMED concepts for two main reasons:
- When we break down source concepts it occurs as a quite time-consuming task. Not all are prepared to that, especially taking into account that this time can be allocated to more important and clinically relevant mappings.
- Usagi will map source concepts to the direct SNOMED counterparts, which will be useless and will need manual review; this again leads us to the first paragraph.
from themis.
Not a good decision, but unless we fix the vocabulary and get SNOMED on board I am afraid that's what it is. Will bring it up with them as one of the issues.
from themis.
Could someone explain the rationale for this solution?
I can think of two reasons why we'd instead always want to use 4210989:
-
Consistency for all family history. As an application developer, that would make my life a lot easier. I can pull all family history in with one query.
-
Explicit link between the disease concept and the family history.
from themis.
Moving this conversation to the Wiki:
http://forums.ohdsi.org/t/how-to-represent-family-history/3386/7
from themis.
@aostropolets Have these mappings been created yet to the concept 4210989? Right now I still see V17.5 mapping to 4167217.
from themis.
I don't think that ICD9CM has been reviewed recently, so it will probably be done as a part of this review. Thanks for the reminder!
from themis.
Yeah, right now it's mapped to Family history
and maps to value to "Asthma".
Is it the final decision?
"If we have a matching concept in SNOMED, then use the respective observation_ concept_id. If we do NOT have a matching SNOMED code, then observation_concept_id should be ‘4210989 Family history with explicit context’ and value_as_concept_id should be the related procedure, condition etc."
from themis.
It is the final decision
from themis.
Good, thanks @aostropolets.
We'll change this
from themis.
ICD10 mappings are already done in this way:
"If we have a matching concept in SNOMED, then use the respective observation_ concept_id. If we do NOT have a matching SNOMED code, then observation_concept_id should be ‘4210989 Family history with explicit context’ and value_as_concept_id should be the related procedure, condition etc."
Waiting for release, just day or two.
ICD10CM and ICD9CM are in still the backlog.
The update takes time as we updating not only the links mentioned above, but reviewing the whole corpus of manual mappings
from themis.
Can someone summarize the final design with an example from ICD9CM and ICD10CM?
from themis.
V17.5 is a interesting - asthma hx became bicycle injury
from themis.
@vojtechhuser please, look at the diagram below to see the final mapping design of ICD concepts indicating a history:
At the present time, we are implementing such a model toward all history-related ICD concepts to increase the number of equivalent mappings.
The current state is the following:
from themis.
It seems that we did have the final decision for this problem
"If we have a matching concept in SNOMED, then use the respective observation_ concept_id. If we do NOT have a matching SNOMED code, then observation_concept_id should be ‘4210989 Family history with explicit context’ and value_as_concept_id should be the related procedure, condition etc."
Is there anyone teach me why this issue is open now?
from themis.
Closing issue. Vocabulary has been updated.
from themis.
Related Issues (20)
- How should we handle quantities of ‘0’ in Devices and Procedures HOT 2
- Is diagnostic system equipments (CT, MRI, etc.) exposure data also included in device_exposure? HOT 1
- Duplicated PROVIDER.NPI HOT 1
- Duplicate Providers? HOT 2
- Mapping from source conditions to standard concepts HOT 1
- How to determine the date to use to populate measurement_date when there are multiple dates in the source
- how to map admitted from to concept table for visit_occurrence HOT 1
- Is it OK to use admin date or claim date for condition_start_date in claims data
- How to link readmission to the primary to primary admission using the field preceding_visit_occurrence_id in the Visit_occurrence table?
- Adding a source value column for IDs to the visit_occurence table HOT 1
- Drug_exposure_end_date for vaccine records HOT 2
- Impute drug_exposure_end_date using ATC Defined Daily Dose (DDD)
- How to store Microbiology Susceptibility data into OMOP CDM
- Can we populate CONDITION_OCCURRENCE.condition_end_date with another date or '2999-12-31' if don't have this information HOT 1
- What should be done with patient reported drugs or conditions HOT 4
- Should we also add a record to CONDITION_OCCURRENCE table for each cause of death HOT 2
- Should we deduplicate same diagnosis records on the same claim or visit HOT 2
- Multiple Specialties per Provider HOT 1
- cost table: guidance to represent capitation monthly cost (for primary care)
- Link cost row A to procedure row B HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from themis.