schuemie Goto Github PK

achilles

Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database

andromeda

AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.

aws.s3

Amazon Simple Storage Service (S3) API Client

cdmuploadr

An R script for uploading date from CSV files in to the OMOP Common Data Model.

cehr-bert

CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks

clusteringplayground

R code for exploring patient clustering using the OHDSI tools

cohortmethod

An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

dataqualitydashboard

A tool to help improve data quality standards in observational data science.

distributedregressioneval

[Under development] R code for evaluating approaches to regression across a distributed network of databases.

examplestudy

This is an example network study

incidenratebenchmark

A benckmark evaluating various approaches to incidence rate calculation

interactionseval

Evaluation of methods for computing interactions in causal effect estimation

jsonschematest

A test of using Json schema to document R objects

justanothercovidplot

latentspace

Some explorations of latent space in electronic health records..

mediationanalysis

Some explorations into mediation analysis in observational data

medlineanalysis

An R package for performing analyses on Medline. Requires ohdsi/MedlineXmlToDatabase to have been executed

nccorrelation

Some code to explore correlation between negative control outcomes

odbc

Connect to ODBC databases (using the DBI interface)

ohdsiauthorgraph

Code for visualizing the network of OHDSI authors. Nodes represent authors, links represent co-authorships.

patientlevelprediction

An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

pda

PDA: Privacy-preserving Distributed Algorithm

thebookofohdsi

The Book of OHDSI repository

traderouteoptimizer

A Java application for computing optimal trade routes for the game Elite: Dangerous

treatmentpatterns

An R package to analyze treatment patterns of a study population of interest