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biopython icon biopython

Various notebooks, tests, experiments, related to biopython but also to python in general.

connectome icon connectome

C. elegans connectome visualization with flexdashboard and threejs.

escc icon escc

Integrated bioinformatics analysis of diferentially expressed genes and immune cell infltration characteristics in Esophageal Squamous cell carcinoma

genomeassembly icon genomeassembly

Textbook describing selected genome assembly algorithms (estimated completion time is 2023/2024).

greedyminer icon greedyminer

R package for data mining. GreedyMiner looks for every statistically significant relationship between variables.

kegg icon kegg

A set of functions utilizing KEGG's API

modal icon modal

Simulation within a simulation

plotdeg icon plotdeg

R package for DGEA and GSEA visualizations

rna-seq icon rna-seq

Shell scripts, R workflows, general notebooks and favorite resources.

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