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algebraic-graphs-io's Introduction

algebraic-graphs-io

This package collects I/O utilities for algebraic-graphs : parsers and serializers for common graph data interchange formats, as well as functionality for downloading and caching larger datasets.

Formats

Currently the following formats are supported :

  • GML : used by a few common graph software packages (NetworkX, Gephi, graphviz, and others)

  • .tsv : tab-separated list of edge data, used e.g. for the Graph Challenge dataset [1]

  • JSON : via 'aeson'

  • CBOR : via 'serialise'

Datasets

The package contains some small example datasets (e.g. "lesmiserables" and "karateclub"); these are provided ready for consumption in Algebra.Graph.IO.Datasets.

There are also bindings to larger datasets, such as the ones provided by the LINQS group [2] (e.g. "citeseer" and "cora").

Contributing

PRs and contributions welcome!

References

[1] GraphChallenge https://graphchallenge.mit.edu/data-sets

[2] LINQS https://linqs.soe.ucsc.edu/data

algebraic-graphs-io's People

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algebraic-graphs-io's Issues

Aeson instances for Graph

It would be better to (de-)serialize the AdjacencyMap representation, rather than the full algebraic graph datastructure. This trades space with time, and would be also valuable as a benchmark.

DOT interface

Currently the interface to GraphViz DOT is incomplete

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