RUNNING test.py:
python test.py --help
usage: test.py [-h] [--fid FID] [--fidlist FIDLIST] [--strategy STRATEGY]
optional arguments:
-h, --help show this help message and exit
--fid FID, -fid FID Family ID. e.g.PF04398.fasta
--fidlist FIDLIST, -fidlist FIDLIST
File containing list of family IDs. e.g.
accession_list.txt
Example:
python test.py --fid P04532 for one family ID.
python test.py --fidlist input_files/accession_list.txt