npklein / mip3 Goto Github PK

Hi,

Whenever I run the program with the example dataset it finishes without any error but I am getting following error with my dataset.

Traceback (most recent call last):
  File "miP3.py", line 309, in <module>
    subject_info_filtered_on_domains = interpro_scanner.interproScan(subject_info_filtered_on_compared_length, all_proteins,pfam_domains_file_path, args['email'], developing, script_path)  # filter on domain information gained from interproscan
  File "/home/sanjay/Desktop/miP3-1.1/interpro_scanner.py", line 121, in interproScan
    interpro_data = interpro_result(interpro_submit_sequences,email,developing, script_dir)
  File "/home/sanjay/Desktop/miP3-1.1/interpro_scanner.py", line 41, in interpro_result
    for protein_name, interpro_result in iprscan_soappy.runInterpro(interpro_submit_sequences, email):					# get dict with as value protein name and as value various stuff
  File "/home/sanjay/Desktop/miP3-1.1/iprscan_soappy.py", line 450, in runInterpro
    yield interproscan.getSequenceNameForJobID(jobid), interpro_result
  File "/home/sanjay/Desktop/miP3-1.1/iprscan_soappy.py", line 237, in getSequenceNameForJobID
    return(self.sequence_name_for_job_id[jobid])
KeyError: 'iprscan5-S20210902-141018-0225-81914800-p1m'

Thanks

The error message:

[main] User-agent: EBI-Sample-Client/2760 (iprscan_soappy.pyc; Python 2.7.14; Windows)

[main] WSDL: http://www.ebi.ac.uk/Tools/services/soap/iprscan5?wsdl

Traceback (most recent call last):

File "miP3.py", line 309, in

subject_info_filtered_on_domains = interpro_scanner.interproScan(subject_info_filtered_on_compared_length, all_proteins,pfam_domains_file_path, args['email'], developing, script_path)  # filter on domain information gained from interproscan

File "D:\miP3-master\interpro_scanner.py", line 137, in interproScan

interpro_data = interpro_result(interpro_submit_sequences, email, developing, script_dir)

File "D:\miP3-master\interpro_scanner.py", line 41, in interpro_result

for protein_name, interpro_result in iprscan_soappy.runInterpro(interpro_submit_sequences, email):

            # get dict with as value protein name and as value various stuff

File "D:\miP3-master\iprscan_soappy.py", line 406, in runInterpro

verbose = True, write_outfiles = False, quiet = False, debugLevel = 1)     # write out any of the results, because it gets parsed directly

File "D:\miP3-master\iprscan_soappy.py", line 117, in init

self.server = WSDL.Proxy(WSDLUrl)

File "C:\Python27\lib\site-packages\SOAPpy\WSDL.py", line 97, in init

callinfo = wstools.WSDLTools.callInfoFromWSDL(port, operation.name)

TypeError: callInfoFromWSDL() takes exactly 3 arguments (2 given)

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0:00:03.031 - End Program

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