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Hi, welcome to my page on Github.

About me

I am doing research in computational biophysics. My interests include functional mechanisms of DNA-protein binding, multi-scale organization of the genome, liquid-liquid phase separation in gene expression, and modeling of biomolecules in molecular dynamics simulations. I write code for MD softwares GENESIS and CafeMol.

In addition to my professional work, I enjoy participating in non-contact sports, and in 2009, I began practicing the Rubik’s cube. My passion and dedication paid off in 2010, when I set a new Chinese national record for the 2×2×2 cube during a competition. Although I have not maintained the same level of practice since then, I am still proud of my achievement and encourage others to pursue their hobbies and passions outside of work. For those interested, my official records can be found on the World Cube Association.

Find me

Cheng Tan's Projects

jchempaint icon jchempaint

Chemical 2D structure editor application/applet based on the Chemistry Development Kit

lammps icon lammps

Public/backup repository of the lammps source

m-cli icon m-cli

 Swiss Army Knife for macOS

maxima-jupyter icon maxima-jupyter

A Maxima kernel for Jupyter, based on CL-Jupyter (Common Lisp kernel)

mdtoolbox icon mdtoolbox

MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories

mdtraj icon mdtraj

A modern, open library for the analysis of molecular dynamics trajectories

mdwiki icon mdwiki

CMS/Wiki system using Javascript for 100% client side single page application using Markdown.

memory icon memory

Very simple memory test tools written in python.

molscript icon molscript

The MolScript program produces publication-quality images of macromolecular 3D structures.

noinil icon noinil

Config files for my GitHub profile.

normalize.css icon normalize.css

A collection of HTML element and attribute style-normalizations

oimo.js icon oimo.js

Lightweight 3d physics engine for javascript

pinang icon pinang

PINANG is a collection of tools for coarse-grained molecular dynamics.

practicalai icon practicalai

📚A practical approach to learning and using machine learning.

prelude icon prelude

Prelude is an enhanced Emacs 24 configuration that should make your experience with Emacs both more pleasant and more powerful.

pyemma icon pyemma

Python API for Emma's Markov Model Algorithms

pyledger icon pyledger

Analyse data logged in org-ledger files and plot simple figs.

pymol-open-source icon pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

pynang icon pynang

The python version of PINANG, a stupid project.

pystardict icon pystardict

Library for manipulating StarDict dictionaries from within Python

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