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N-dimensional affine transform using C++17, OpenMP and pybind11

License: MIT License

CMake 1.20% Python 37.47% C++ 61.33%

python c-plus-plus openmp pybind11 affine-transformation

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codacy-badger danieleboaretti

affine_transform_nd's Issues

Allow different output shapes

It would be nice to have the option to not only have input.shape==output.shape. A possible usage scenario would be to only extract one slice from the 3D volume.

Add badges

Add badges to the project to provide an easy project status overview.

Bring coverage to 100%

While a coverage of 100% is no guarantee for bug-free code, a coverage of less than 100% can be a sign of poor testing. Here it is easy to fix, so it should be done.

Translation should be explicitly cast to float

Otherwise it can cause issues when other inputs are given as floats (e.g. output_image_origin has a casting error in line 121).

Appveyor succeeds even though there is an error during coverage collection

Coverage fails during the AppVeyor runs (see below). Still, the run is reported as a success.

should be closed by #12

%PYTHON%/python -m codecov
The filename, directory name, or volume label syntax is incorrect.
FIND: Parameter format not correct
'coverage' is not recognized as an internal or external command,
operable program or batch file.
      _____          _
     / ____|        | |
    | |     ___   __| | ___  ___ _____   __
    | |    / _ \ / _  |/ _ \/ __/ _ \ \ / /
    | |___| (_) | (_| |  __/ (_| (_) \ V /
     \_____\___/ \____|\___|\___\___/ \_/
                                    v2.0.15
==> Detecting CI provider
    AppVeyor Detected
==> Preparing upload
    Error running `cd 'C:\projects\affine-transform-nd' && git ls-files`: None
==> Processing gcov (disable by -X gcov)
    Executing gcov (find 'C:\projects\affine-transform-nd' -not -path './bower_components/**' -not -path './node_modules/**' -not -path './vendor/**' -type f -name '*.gcno'  -exec gcov -pb  {} +)
    Error running `find 'C:\projects\affine-transform-nd' -not -path './bower_components/**' -not -path './node_modules/**' -not -path './vendor/**' -type f -name '*.gcno'  -exec gcov -pb  {} +`: None
==> Collecting reports
XX> Searching for reports disabled
    Generating coverage xml reports for Python
    Error running `coverage xml -i`: None
    - Ignored: [Errno 2] No such file or directory: 'C:\\projects\\affine-transform-nd\\coverage.xml'
Error: No coverage report found
Tip: See all example repositories: https://github.com/codecov?query=example
Support channels:
  Email:   [email protected]
  IRC:     #codecov
  Gitter:  https://gitter.im/codecov/support
  Twitter: @codecov
Build success

Add AppVeyor for Windows testing

To make sure the code compiles on Windows and Linux, AppVeyor could be added as a CI service.

Add benchmarks

Some simple benchmarks should be added to give a comparison to the ndimage affine transform.

pip install failed on windows , python 3.10.10

Hi,
Thanks for your response in here

I followed your suggestions and did the following things:

uninstalled the cmake python package.
download cmake from here: https://cmake.org/download/
add it the PATH (C:\Program Files\CMake\bin)
run pip install again and got the following error:

Collecting affine-transform
Using cached affine_transform-0.3.2.tar.gz (1.2 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: numpy in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from affine-transform) (1.23.5)
Requirement already satisfied: mgen in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from affine-transform) (1.2.1)
Requirement already satisfied: setuptools-scm in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from affine-transform) (7.1.0)
Requirement already satisfied: pbr in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from mgen->affine-transform) (5.11.1)
Requirement already satisfied: packaging>=20.0 in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from setuptools-scm->affine-transform) (23.1)
Requirement already satisfied: setuptools in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from setuptools-scm->affine-transform) (67.7.2)
Requirement already satisfied: typing-extensions in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from setuptools-scm->affine-transform) (4.4.0)
Requirement already satisfied: tomli>=1.0.0 in c:\users\nogak\miniconda3\envs\dti_project\lib\site-packages (from setuptools-scm->affine-transform) (2.0.1)
Building wheels for collected packages: affine-transform
Building wheel for affine-transform (pyproject.toml) ... error
error: subprocess-exited-with-error

× Building wheel for affine-transform (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [139 lines of output]
running bdist_wheel
running build
running build_py
creating build
creating build\lib.win-amd64-cpython-310
creating build\lib.win-amd64-cpython-310\affine_transform
copying affine_transform\affine_transform.py -> build\lib.win-amd64-cpython-310\affine_transform
copying affine_transform_init_.py -> build\lib.win-amd64-cpython-310\affine_transform
copying affine_transform\version.txt -> build\lib.win-amd64-cpython-310\affine_transform
running build_ext
:29: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
-- Building for: Visual Studio 17 2022
-- The C compiler identification is MSVC 19.34.31937.0
-- The CXX compiler identification is MSVC 19.34.31937.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - failed
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio/2022/BuildTools/VC/Tools/MSVC/14.34.31933/bin/Hostx64/x64/cl.exe
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio/2022/BuildTools/VC/Tools/MSVC/14.34.31933/bin/Hostx64/x64/cl.exe - broken
CMake Error at C:/Users/nogak/AppData/Local/Temp/pip-build-env-2ni2hpjc/overlay/Lib/site-packages/cmake/data/share/cmake-3.26/Modules/CMakeTestCCompiler.cmake:67 (message):
The C compiler

      "C:/Program Files (x86)/Microsoft Visual Studio/2022/BuildTools/VC/Tools/MSVC/14.34.31933/bin/Hostx64/x64/cl.exe"

    is not able to compile a simple test program.

    It fails with the following output:

      Change Dir: C:/Users/nogak/AppData/Local/Temp/pip-install-krz0k8qt/affine-transform_e25f18aaf3054035912ebbf714671681/build/temp.win-amd64-cpython-310/Release/CMakeFiles/CMakeScratch/TryCompile-3kgrbd

      Run Build Command(s):C:/Program Files (x86)/Microsoft Visual Studio/2022/BuildTools/MSBuild/Current/Bin/amd64/MSBuild.exe cmTC_48e76.vcxproj /p:Configuration=Debug /p:Platform=x64 /p:VisualStudioVersion=17.0 /v:n && MSBuild version 17.4.1+9a89d02ff for .NET Framework
      Build started 14/05/2023 19:25:33.
      Project "C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj" on node 1 (default targets).
      PrepareForBuild:
        Creating directory "cmTC_48e76.dir\Debug\".
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppBuild.targets(527,5): warning MSB8029: The Intermediate directory or Output directory cannot reside under the Temporary directory as it could lead to issues with incremental build. [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
        Creating directory "C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\Debug\".
        Creating directory "cmTC_48e76.dir\Debug\cmTC_48e76.tlog\".
      InitializeBuildStatus:
        Creating "cmTC_48e76.dir\Debug\cmTC_48e76.tlog\unsuccessfulbuild" because "AlwaysCreate" was specified.
      ClCompile:
        C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Tools\MSVC\14.34.31933\bin\HostX64\x64\CL.exe /c /Zi /W3 /WX- /diagnostics:column /Od /Ob0 /D _MBCS /D WIN32 /D _WINDOWS /D "CMAKE_INTDIR=\"Debug\"" /Gm- /RTC1 /MDd /GS /fp:precise /Zc:wchar_t /Zc:forScope /Zc:inline /Fo"cmTC_48e76.dir\Debug\\" /Fd"cmTC_48e76.dir\Debug\vc143.pdb" /external:W3 /Gd /TC /errorReport:queue "C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\testCCompiler.c"
        Microsoft (R) C/C++ Optimizing Compiler Version 19.34.31937 for x64
        testCCompiler.c
        Copyright (C) Microsoft Corporation.  All rights reserved.
        cl /c /Zi /W3 /WX- /diagnostics:column /Od /Ob0 /D _MBCS /D WIN32 /D _WINDOWS /D "CMAKE_INTDIR=\"Debug\"" /Gm- /RTC1 /MDd /GS /fp:precise /Zc:wchar_t /Zc:forScope /Zc:inline /Fo"cmTC_48e76.dir\Debug\\" /Fd"cmTC_48e76.dir\Debug\vc143.pdb" /external:W3 /Gd /TC /errorReport:queue "C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\testCCompiler.c"
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003: The specified task executable "CL.exe" could not be run. System.IO.DirectoryNotFoundException: Could not find a part of the path 'C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.dir\Debug\cmTC_48e76.tlog'. [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.FileSystemEnumerableIterator`1.CommonInit() [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.FileSystemEnumerableIterator`1..ctor(String path, String originalUserPath, String searchPattern, SearchOption searchOption, SearchResultHandler`1 resultHandler, Boolean checkHost) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.Directory.GetFiles(String path, String searchPattern) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.Utilities.TrackedDependencies.ExpandWildcards(ITaskItem[] expand) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.Utilities.CanonicalTrackedOutputFiles.InternalConstruct(ITask ownerTask, ITaskItem[] tlogFiles, Boolean constructOutputsFromTLogs) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.CPPTasks.CL.PostExecuteTool(Int32 exitCode) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.CPPTasks.TrackedVCToolTask.ExecuteTool(String pathToTool, String responseFileCommands, String commandLineCommands) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.Utilities.ToolTask.Execute() [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      Done Building Project "C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj" (default targets) -- FAILED.

      Build FAILED.

      "C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj" (default target) (1) ->
      (PrepareForBuild target) ->
        C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppBuild.targets(527,5): warning MSB8029: The Intermediate directory or Output directory cannot reside under the Temporary directory as it could lead to issues with incremental build. [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]


      "C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj" (default target) (1) ->
      (ClCompile target) ->
        C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003: The specified task executable "CL.exe" could not be run. System.IO.DirectoryNotFoundException: Could not find a part of the path 'C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.dir\Debug\cmTC_48e76.tlog'. [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.__Error.WinIOError(Int32 errorCode, String maybeFullPath) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.FileSystemEnumerableIterator`1.CommonInit() [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.FileSystemEnumerableIterator`1..ctor(String path, String originalUserPath, String searchPattern, SearchOption searchOption, SearchResultHandler`1 resultHandler, Boolean checkHost) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at System.IO.Directory.GetFiles(String path, String searchPattern) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.Utilities.TrackedDependencies.ExpandWildcards(ITaskItem[] expand) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.Utilities.CanonicalTrackedOutputFiles.InternalConstruct(ITask ownerTask, ITaskItem[] tlogFiles, Boolean constructOutputsFromTLogs) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.CPPTasks.CL.PostExecuteTool(Int32 exitCode) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.CPPTasks.TrackedVCToolTask.ExecuteTool(String pathToTool, String responseFileCommands, String commandLineCommands) [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]
      C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\MSBuild\Microsoft\VC\v170\Microsoft.CppCommon.targets(703,5): error MSB6003:    at Microsoft.Build.Utilities.ToolTask.Execute() [C:\Users\nogak\AppData\Local\Temp\pip-install-krz0k8qt\affine-transform_e25f18aaf3054035912ebbf714671681\build\temp.win-amd64-cpython-310\Release\CMakeFiles\CMakeScratch\TryCompile-3kgrbd\cmTC_48e76.vcxproj]

          1 Warning(s)
          1 Error(s)

      Time Elapsed 00:00:00.41





    CMake will not be able to correctly generate this project.
  Call Stack (most recent call first):
    CMakeLists.txt:2 (project)


  -- Configuring incomplete, errors occurred!
  Traceback (most recent call last):
    File "C:\Users\nogak\miniconda3\envs\DTI_project\lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 353, in <module>
      main()
    File "C:\Users\nogak\miniconda3\envs\DTI_project\lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 335, in main
      json_out['return_val'] = hook(**hook_input['kwargs'])
    File "C:\Users\nogak\miniconda3\envs\DTI_project\lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 251, in build_wheel
      return _build_backend().build_wheel(wheel_directory, config_settings,
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\build_meta.py", line 416, in build_wheel
      return self._build_with_temp_dir(['bdist_wheel'], '.whl',
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\build_meta.py", line 401, in _build_with_temp_dir
      self.run_setup()
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\build_meta.py", line 338, in run_setup
      exec(code, locals())
    File "<string>", line 111, in <module>
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\__init__.py", line 107, in setup
      return distutils.core.setup(**attrs)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\core.py", line 185, in setup
      return run_commands(dist)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\core.py", line 201, in run_commands
      dist.run_commands()
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 969, in run_commands
      self.run_command(cmd)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\dist.py", line 1244, in run_command
      super().run_command(command)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 988, in run_command
      cmd_obj.run()
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\normal\Lib\site-packages\wheel\bdist_wheel.py", line 343, in run
      self.run_command("build")
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\cmd.py", line 318, in run_command
      self.distribution.run_command(command)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\dist.py", line 1244, in run_command
      super().run_command(command)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 988, in run_command
      cmd_obj.run()
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\command\build.py", line 131, in run
      self.run_command(cmd_name)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\cmd.py", line 318, in run_command
      self.distribution.run_command(command)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\dist.py", line 1244, in run_command
      super().run_command(command)
    File "C:\Users\nogak\AppData\Local\Temp\pip-build-env-2ni2hpjc\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 988, in run_command
      cmd_obj.run()
    File "<string>", line 36, in run
    File "<string>", line 67, in build_extension
    File "C:\Users\nogak\miniconda3\envs\DTI_project\lib\subprocess.py", line 369, in check_call
      raise CalledProcessError(retcode, cmd)
  subprocess.CalledProcessError: Command '['cmake', 'C:\\Users\\nogak\\AppData\\Local\\Temp\\pip-install-krz0k8qt\\affine-transform_e25f18aaf3054035912ebbf714671681', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=C:/Users/nogak/AppData/Local/Temp/pip-install-krz0k8qt/affine-transform_e25f18aaf3054035912ebbf714671681/build/lib.win-amd64-cpython-310/affine_transform', '-DPYTHON_EXECUTABLE=C:\\Users\\nogak\\miniconda3\\envs\\DTI_project\\python.exe', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE=C:/Users/nogak/AppData/Local/Temp/pip-install-krz0k8qt/affine-transform_e25f18aaf3054035912ebbf714671681/build/lib.win-amd64-cpython-310/affine_transform', '-A', 'x64']' returned non-zero exit status 1.
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for affine-transform
Failed to build affine-transform
ERROR: Could not build wheels for affine-transform, which is required to install pyproject.toml-based projects

Thanks!

Giving arrays other than float64 arrays leads to empty return array

Version 0.2.4 is significantly slower than 0.2.2

I've noticed that there is a significant slow-down in transform() from version 0.2.2 to version 0.2.4. For reference, using the function in the exact same way for both versions on a numpy array of size 650^3 takes about 0.1s for the former, while it takes a full 2s for the latter.

Any ideas for why this happens?

pip install fail on Windows with Python 3.8

I was trying to install the package with pip but I encoutered some errors, see log below. The compiler is vc42.
Is it possible that Eigen (and/or pybind11 submodules) should be updated?
error-log_20201026.txt

PyPi install is broken

Since the downloaded sdist is no longer a git repository, the git commands inside setup.py fail when installing.

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