Integrated Differential Expression and Annotation
Home Page: https://idea-bio.readthedocs.io
License: MIT License
This is a python module to perform GO analysis using Enrichr and visualize the bipartite graph of terms and genes as an interactive force-directed graph.
This uses pvsvg as the python wrapper to the
force-directed graph visualization javascript library vis.js
and ggetrs
to perform the gene set enrichment using the Enrichr API.
Checkout my documentation for information on installation, usage, and recipes for analysis.
pyvis crashes when non-float64 is used. I bet it will crash with non 64 int types as well
seems to be the cleanest solution to getting an export svg button
allow node scaling term in the case that GSEA and DEGs are on massively different scales
The range right now is way too wide to be useful
the embedded html conflicts with the styling of darkmode
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