nlhepler Goto Github PK

hyphy

HyPhy: Hypothesis testing using Phylogenies

idepi

IDentify EPItopes

jinja2

The Jinja2 template engine

joblib

Python function as pipeline jobs.

julia

The Julia Language: A fresh approach to technical computing.

learn_you_a_scalaz

Learn You a Scalaz for Greatest Good

liblbfgs

libLBFGS: a library of Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS)

libuv

Platform-independent event layer for Node.js.

locitools

Generate phased, (super-)high-quality per-locus consensus sequences from PacBio data leveraging a database of per-locus references and LongAmpliconAnalysis

martian-rust

Adapter for writing Martian stages in Rust

mathnet-numerics

Math.NET Numerics

matplotlib

metadata.jl

Metadata for registered Julia packages.

mimalloc_rust

A Rust wrapper over Microsoft's MiMalloc memory allocator

miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

mono

Mono open source ECMA CLI, C# and .NET implementation.

mrmr

minimum Redundancy Maximum Relevance

multinomialgridmixture

Multinomial Grid Mixture model for filtering NGS errors

ndarray

ndarray: an N-dimensional array with array views, multidimensional slicing, and efficient operations

ndarray-linalg

Linear algebra package for rust-ndarray using LAPACK binding

nlhepler.github.io

source for my summary website

pacbiofileformats

Specifications for PacBio® native file formats

pbccs

PacBio circular consensus sequencing

pbcore

A Python library for reading and writing PacBio® data files

pbdoctorb

PacBio data inspection/munging tools (unsupported)

pbmm2

A minimap2 frontend for PacBio native data formats

pbsmrtpipe

PacBio Workflow Engine

project-rosalind

SFSharp "Project Rosalind" playground

pydot

a python2/3 compatible version of pydot

pydot-py3

ALERT: This repository has been deprecated in favor of github.com/nlhepler/pydot