Welcome! A brief overview of this repository can be found below

• snakefiles subdirectory contains all pipeline snakefiles
• other directories contain scripts specific to pipeline

• this folder is the core for all pipelines
• data folder
• slurm folder contains config file specific to computing cluster
• log folder contains output/error messages from all rules

• figures and csv tables for use in publication

• safe-mode debug tool for job submissions
• allows prior confirmatino that snakemake will run proper rules without overwriting existing files
• select snakefile within script to confirm pipeline

• job submitter for pipeline
• select snakefile within script to confirm pipeline

A workflowr site providing additional detail can be found here.

A workflowr project.