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g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o adsorption.o adsorption.cpp
In file included from adsorption.cpp:18:0:
adsorption.h: In constructor ‘MicroProcesses::Adsorption::Adsorption()’:
adsorption.h:111:9: warning: ‘MicroProcesses::Adsorption::m_iNeighNum’ will be initialized after [-Wreorder]
     int m_iNeighNum;
         ^~~~~~~~~~~
adsorption.h:88:16: warning:   ‘Apothesis* MicroProcesses::Adsorption::m_apothesis’ [-Wreorder]
     Apothesis* m_apothesis;
                ^~~~~~~~~~~
adsorption.cpp:26:1: warning:   when initialized here [-Wreorder]
 Adsorption::Adsorption():m_sName("Adsorption"),m_iNeighNum(0), m_apothesis(0)
 ^~~~~~~~~~
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o diffusion.o diffusion.cpp
In file included from diffusion.cpp:18:0:
diffusion.h: In constructor ‘MicroProcesses::Diffusion::Diffusion()’:
diffusion.h:101:9: warning: ‘MicroProcesses::Diffusion::m_iNeighNum’ will be initialized after [-Wreorder]
     int m_iNeighNum;
         ^~~~~~~~~~~
diffusion.h:78:16: warning:   ‘Apothesis* MicroProcesses::Diffusion::m_apothesis’ [-Wreorder]
     Apothesis* m_apothesis;
                ^~~~~~~~~~~
diffusion.cpp:27:1: warning:   when initialized here [-Wreorder]
 Diffusion::Diffusion():m_sName("Diffusion"),m_iNeighNum(0), m_apothesis(0)
 ^~~~~~~~~
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o errorhandler.o errorhandler.cpp
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o factory_process.o factory_process.cpp
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o io.o io.cpp
In file included from io.cpp:18:0:
io.h: In constructor ‘IO::IO(Apothesis*)’:
io.h:188:12: warning: ‘IO::m_sIterations’ will be initialized after [-Wreorder]
     string m_sIterations;
            ^~~~~~~~~~~~~
io.h:185:12: warning:   ‘std::__cxx11::string IO::m_sCommentLine’ [-Wreorder]
     string m_sCommentLine;
            ^~~~~~~~~~~~~~
io.cpp:20:1: warning:   when initialized here [-Wreorder]
 IO::IO(Apothesis* apothesis):Pointers( apothesis),
 ^~
io.cpp: In member function ‘void IO::init(int, char**)’:
io.cpp:38:20: warning: unused parameter ‘argc’ [-Wunused-parameter]
 void IO::init( int argc, char* argv[] )
                    ^~~~
io.cpp:38:37: warning: unused parameter ‘argv’ [-Wunused-parameter]
 void IO::init( int argc, char* argv[] )
                                     ^
io.cpp: In member function ‘std::__cxx11::string IO::getInputPath() const’:
io.cpp:44:35: warning: no return statement in function returning non-void [-Wreturn-type]
 string IO::getInputPath() const {;}
                                   ^
io.cpp: In member function ‘void IO::readInputFile()’:
io.cpp:67:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for ( int i = 0; i< vsTokens.size(); i++){
                      ~^~~~~~~~~~~~~~~~~
io.cpp:151:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for ( int i = 2; i < vsTokens.size(); i++ ){
                        ~~^~~~~~~~~~~~~~~~~
io.cpp: In member function ‘std::__cxx11::string IO::simplified(std::__cxx11::string)’:
io.cpp:177:10: warning: unused variable ‘i’ [-Wunused-variable]
   size_t i = 0;
          ^
io.cpp:180:20: warning: variable ‘it’ set but not used [-Wunused-but-set-variable]
   string::iterator it = str.begin();
                    ^~
io.cpp: In member function ‘bool IO::isNumber(std::__cxx11::string)’:
io.cpp:207:10: warning: unused variable ‘i’ [-Wunused-variable]
   size_t i = 0;
          ^
io.cpp:209:20: warning: variable ‘it’ set but not used [-Wunused-but-set-variable]
   string::iterator it = str.begin();
                    ^~
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o lattice.o lattice.cpp
lattice.cpp: In member function ‘void Lattice::build()’:
lattice.cpp:60:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for ( int i = 0; i < m_vSites.size(); i++)
                    ~~^~~~~~~~~~~~~~~~~
lattice.cpp: In member function ‘void Lattice::check()’:
lattice.cpp:675:7: warning: unused variable ‘k’ [-Wunused-variable]
   int k = 0;
       ^
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o parameters.o parameters.cpp
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o process.o process.cpp
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o site.o site.cpp
g++ -c -pipe -O2 -std=gnu++11 -Wall -W -fPIC  -I. -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o apothesis.o apothesis.cpp
In file included from pointers.h:21:0,
                 from apothesis.cpp:18:
apothesis.h: In constructor ‘Apothesis::Apothesis(int, char**)’:
apothesis.h:49:14: warning: ‘Apothesis::pLattice’ will be initialized after [-Wreorder]
     Lattice* pLattice;
              ^~~~~~~~
apothesis.h:46:9: warning:   ‘IO* Apothesis::pIO’ [-Wreorder]
     IO* pIO;
         ^~~
apothesis.cpp:29:1: warning:   when initialized here [-Wreorder]
 Apothesis::Apothesis( int argc, char* argv[] ):pLattice( 0 ),pIO( 0 )
 ^~~~~~~~~
apothesis.cpp: In member function ‘void Apothesis::init()’:
apothesis.cpp:68:7: warning: unused variable ‘procsCounter’ [-Wunused-variable]
   int procsCounter = 0;
       ^~~~~~~~~~~~
g++ -Wl,-O1 -o Apothesis adsorption.o diffusion.o errorhandler.o factory_process.o io.o lattice.o main.o parameters.o process.o site.o apothesis.o